Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2140 ATGGTTTTTACTTCCATACCAGCAGCTTATCTTGATGCAGCCAACTGGCAGCAACAGCAACCAAATCACCAACCCGGAGGCAGTGGTTCCACCTTTCAGCAACTGCTTCCGCTGCCGCTGCCGTCCGCGTTGACGCAGTCTCATGGAGCTGGTTCTATCAGGCCAGGATCGATGGCTGATAGGGCAAGGATGGCCAACTTGCCTATGCCAGAGGCTGCACTCAAGTGTCCACGCTGCGAATCCACCAACACCAAATTTTGCTACTTCAACAACTACAGTCTCTCTCAGCCCCGCCACTTCTGTAAGACCTGCAGGAGGTACTGGACCAGAGGTGGCACCCTCAGGAATGTCCCTGTCGGTGGCGGCTGCCGGAGGAACAAGCAGAGCAAAGGAAGCAGCAGCGGCTCCAAGTCTCCAGCGAGCTCCGACCGCCAGACGGGGAGTGCCAGTTCCACCAACTCGGTCTCTTCCAATAGTGCCTCTGCTGCTGACATAATAGGCCTAGCACCCCAAATGCCACCACTTAGGTTCATGCCTCCATTGCATCAACTCACTGACTTTAGAGCTGGAGATATGGGCCTAAACTATGGCCTCAGTTCTGGCCCAATGGGAGGAGTAGGGGACTTGAGTTTCCAGATTGGAGGAAGTGCTTTTGGTGGTGGTAGTTCAATCATGTCTGCAACTAGTTTGGAGCAATGGAGAATGCAACAGCAGTTTCCCCTCTTGGCTGCCTTGGAAGGTTCATCACCAGCTGCTAATTTATACCCTTTTGAAGGCAGTGCTGAGGTAAGTGGATATGTGAGGCCAAAGGTTTCAACTTCTGGGATCATAACTCAGCTGGCTTCAGTGAAAATGGAAGATAGTAGGGAACTTAACTTGTCAACCCAGTTCTTGGGAAACAATAATCCAGTGAAGGAACAATATTGGACCAGTGCTACTTCTGCATCTTGGACAGATATTTCAGGCTTTAGCTCTTCTTTTACTACTAGCAACCAGCTATAG 1002 0.51 MVFTSIPAAYLDAANWQQQQPNHQPGGSGSTFQQLLPLPLPSALTQSHGAGSIRPGSMADRARMANLPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGTLRNVPVGGGCRRNKQSKGSSSGSKSPASSDRQTGSASSTNSVSSNSASAADIIGLAPQMPPLRFMPPLHQLTDFRAGDMGLNYGLSSGPMGGVGDLSFQIGGSAFGGGSSIMSATSLEQWRMQQQFPLLAALEGSSPAANLYPFEGSAEVSGYVRPKVSTSGIITQLASVKMEDSRELNLSTQFLGNNNPVKEQYWTSATSASWTDISGFSSSFTTSNQL 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2140 333 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 12 327 - -
Ssu4g2140 333 MobiDBLite consensus disorder prediction 126 157 - -
Ssu4g2140 333 ProSitePatterns Zinc finger Dof-type signature. 76 112 IPR003851 GO:0003677|GO:0006355
Ssu4g2140 333 ProSiteProfiles Zinc finger Dof-type profile. 74 128 IPR003851 GO:0003677|GO:0006355
Ssu4g2140 333 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 12 327 IPR045174 GO:0003700|GO:0006355
Ssu4g2140 333 MobiDBLite consensus disorder prediction 118 157 - -
Ssu4g2140 333 Pfam Dof domain, zinc finger 73 128 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2140 Ssu-Chr4 46929051 46930264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2140 1 326 C2C2-Dof Transcription Factor Family AT2G37590 39.385 2.91e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu4g2140 zf-Dof 1.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2140 - - vra:106773377 450.284