Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1841 ATGAGGGTGTGCTACCTGCATGCGGAGACTGAATTTGGAGCACAACCGTGGTTGGGGAAGCATGGTTATGCTTTGGCTTTGCACCTAACTCTAAGTTGTGGAGGACATTCACAgcaCTACAGAGATCCTCTCCCATGGAATTATGTCCATTCTGAACCAGTTTTGGCCCTGGATGTGCCTGCACCTATTCCACCAGAGTGCAAGCTGTTCTTGAAGTGCAAACTGTTGTACCACCTCCTCAAGATTCAACTTCTGCAACTTCAGTGCCAATGCAACCTCTTCAGATATATAAGACTAGAAGAACGTTTCAAAGAGTTGAGCAAGGTGGATCGAAGGCATGGGAAGAGGCCTCTCCCTTCTGATCATGCATCAAGGGAGAAAAGGGAAGATTTCAACTTTCCTGTTCAGCCATCTCCATCTAAGAACCAAGGGGAAGAAACTTCTCTATTCCCCTTTATACATCCAATCAACACTGGTGATGATAGCACCCCCTCTATACCAATACAACAATATGGGCAACTAAGCACCTCTTGCTTGATTGAGACGCAGGACCCATCCCAGCAGCCTTTAAATCAAGGAAATGCGAGAAAAAGACACTATCGAGGAGTTAGGCAGAGACCATGGGGCAAATGGGCTGCCGAAATCCGCGACCCTAAAAAGGCTGCTAGAGTGTGGCTTGGCACGTTTGACACGGCAGAGGCTGCAGCTGCTGCTTATGATGCTGCTGCCTTGAAGTTCAAAGGATCCAAAGCGAAGCTCAATTTCCCAGAACACGTTCTTGTTGCTCCAATATCACCTTGCAATCAAAATAATAGTCACAATAATTATGCTTCTTCGGCTCTTgcaccaccaccatcacaacCGGTTTATCAACCACAACCCttgttatcatcatcatcagaaGGGTTCCCGAACCTAATGCAGTACGCGCAGCTTCTTTGGAGTAGGGATGATGATGATCTACAACGTGTTGCTTCTGGTCTTCAgaaccatcatcatcatcatcatcccaGTGAGCCCTTTTATGATTCAAGTTCTTCAACTTTGTTCTCATCATCGTCCACTTCTATGGCTCCGTCTGATCAACATCAGATTGGAGATGACACGAGTGATCCCAAAGGGGGAGAATATTATAGTTCTTGCTTTTTTAGAGGGAGTGGTTTCCATGACAAGAATTGA 1179 0.4343 MRVCYLHAETEFGAQPWLGKHGYALALHLTLSCGGHSQHYRDPLPWNYVHSEPVLALDVPAPIPPECKLFLKCKLLYHLLKIQLLQLQCQCNLFRYIRLEERFKELSKVDRRHGKRPLPSDHASREKREDFNFPVQPSPSKNQGEETSLFPFIHPINTGDDSTPSIPIQQYGQLSTSCLIETQDPSQQPLNQGNARKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAAAYDAAALKFKGSKAKLNFPEHVLVAPISPCNQNNSHNNYASSALAPPPSQPVYQPQPLLSSSSEGFPNLMQYAQLLWSRDDDDLQRVASGLQNHHHHHHPSEPFYDSSSSTLFSSSSTSMAPSDQHQIGDDTSDPKGGEYYSSCFFRGSGFHDKN 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1841 392 MobiDBLite consensus disorder prediction 275 297 - -
Ssu4g1841 392 PANTHER DNA-BINDING DOMAIN 160 377 IPR044808 GO:0003700|GO:0009873
Ssu4g1841 392 MobiDBLite consensus disorder prediction 328 373 - -
Ssu4g1841 392 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Ssu4g1841 392 SMART rav1_2 199 262 IPR001471 GO:0003700|GO:0006355
Ssu4g1841 392 CDD AP2 199 258 IPR001471 GO:0003700|GO:0006355
Ssu4g1841 392 SUPERFAMILY DNA-binding domain 199 257 IPR016177 GO:0003677
Ssu4g1841 392 MobiDBLite consensus disorder prediction 108 144 - -
Ssu4g1841 392 Gene3D AP2/ERF domain 198 258 IPR036955 GO:0003700|GO:0006355
Ssu4g1841 392 PRINTS Ethylene responsive element binding protein signature 222 238 IPR001471 GO:0003700|GO:0006355
Ssu4g1841 392 PRINTS Ethylene responsive element binding protein signature 200 211 IPR001471 GO:0003700|GO:0006355
Ssu4g1841 392 MobiDBLite consensus disorder prediction 108 132 - -
Ssu4g1841 392 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 160 377 - -
Ssu4g1841 392 ProSiteProfiles AP2/ERF domain profile. 199 256 IPR001471 GO:0003700|GO:0006355
Ssu4g1841 392 Pfam AP2 domain 199 248 IPR001471 GO:0003700|GO:0006355
Ssu4g1841 392 MobiDBLite consensus disorder prediction 341 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1841 Ssu-Chr4 33588940 33598925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1841 156 271 AP2-EREBP Transcription Factor Family AT5G61890 60.000 2.23e-38 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu4g1841 AP2 2.6e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1841 4 33588940 33598925 Ssu1g2444 1 68043719 68045809 ECH
Ssu4g1841 4 33588940 33598925 Ssu5g2957 5 76334643 76341366 ECH
Ssu4g1841 4 33588940 33598925 Ssu4g1841 4 33588940 33598925 ECH
Ssu3g0244 3 4364514 4368053 Ssu4g1841 4 33588940 33598925 ECH
Ssu4g1841 4 33588940 33598925 Ssu7g0921 7 20037410 20047366 PCT
Ssu9g0304 9 15286486 15287971 Ssu4g1841 4 33588940 33598925 PCT