Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1709 ATGTCTCAGACAGAGAAGGATCCGGGTATCAGGCTATTTGGCAGGAAGATTCCGGTGCCGGAATGTCAGATTCCGGCCAACTCTGGACCCACGGATGCTTGCAGCAGCATAAAGAAAACAGAACTGGAAATACCTAGTGAATGTGAAGAAAACTCGGAGCAACACGAAAATTCTTCTGATTTAAGGGATGGTAAACAAGACTCCCAACATAAGGTGCTGGAAAATGAGCCATTAGTGAATCCCAAGCCTGTGGAAGATAATATGGAGACTGGTAGCTCAGATCAAGATAAAGTCTTAAAGAAACCAGACAAGATTGTTCAGTGTCCACGATGCAACAGTTTGGACACcaagttttgttattttaataactacAACGTTAATCAACCTCGGCATTTCTGCAAGCACTGCCAAAGGTATTGGACTGCTGGTGGAACAATGAGAAATGTTCCCATAGGTGCTGGGAGACGGAAGAACAAGCACCTAGCCTCTCAATACCGACACATCATAGTAACCTCTGATGGAATTCCAACCTCCAGGCTAGAAACCACAGACTTGTCTAGTCACCACCAGCAACATATCTCAAGTCTTGACTCCTCAGTTCCTTTCAGGTCTTCAACAGATGATGGCACTGTATTGAAATTTGGTCCAGATACCCCTCTTTGCGAATCGATGGATTCAATGCTTAATCTTAGAGACCAGAGAAGATATCTTGATGCAAGTTCTGTCAGTTGTGTAGAGTATGGAGGGGAACCATCTTTATGTGGATCTTCTGTGACAAATAATGGTACTCAAGGAAATGAATTATCTGAACATAATGCATCAAATTGGTTACAATGTTACCCTGTTCCTCCACCATGGGTACTACCTTATCCAGGTTGGAATAATGTGAATTCCATGGAACCAGTTCATCAATCTTCAGCACCAATGCGCAACCCATATAACGCTGGTCCTGCAGCAATGCAATGGTGTCCCACACCAATGGTTGCCATTCCTGGCATGTGCCCACCAAGCATTCCTTTGCAACTTGTACCACCACCATACTGGAGTGGAACACCACTATGGAATGCTGGAACTGGGGCAGTATCAATAGGATCCAATGCTTGCCTTTCCCCGTCTTCCTCCACTAGTAACAGTTGCTGCTCGGGCAATGGCTCCCCAACCCTTGGCAAACACACTAGAGATACAGTTTTCACTGATGAAGAGAAATCAGAGAGGTGTGTTTTGGTTCCAAAGACCATTAGAATTGATGCCCCAAATGAGGTCTCAAAAAGTCCTATAAGGGCTACATTAGCTATCAAGCCTGACCAACAGCAATCTTTGTCAAATGGTGATATTTGGAAAAAAAGTGAACCAAAAGAAGGCAAAGATCGTGTATTGGGTGCCTCTCAAATATTGGAAGCCAACCCAGCAGCTATTTCTCGTGCTCATGCATTTCAGGAGGGCATATAG 1449 0.4389 MSQTEKDPGIRLFGRKIPVPECQIPANSGPTDACSSIKKTELEIPSECEENSEQHENSSDLRDGKQDSQHKVLENEPLVNPKPVEDNMETGSSDQDKVLKKPDKIVQCPRCNSLDTKFCYFNNYNVNQPRHFCKHCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRHIIVTSDGIPTSRLETTDLSSHHQQHISSLDSSVPFRSSTDDGTVLKFGPDTPLCESMDSMLNLRDQRRYLDASSVSCVEYGGEPSLCGSSVTNNGTQGNELSEHNASNWLQCYPVPPPWVLPYPGWNNVNSMEPVHQSSAPMRNPYNAGPAAMQWCPTPMVAIPGMCPPSIPLQLVPPPYWSGTPLWNAGTGAVSIGSNACLSPSSSTSNSCCSGNGSPTLGKHTRDTVFTDEEKSERCVLVPKTIRIDAPNEVSKSPIRATLAIKPDQQQSLSNGDIWKKSEPKEGKDRVLGASQILEANPAAISRAHAFQEGI 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1709 482 MobiDBLite consensus disorder prediction 1 99 - -
Ssu4g1709 482 ProSiteProfiles Zinc finger Dof-type profile. 106 160 IPR003851 GO:0003677|GO:0006355
Ssu4g1709 482 Pfam Dof domain, zinc finger 103 160 IPR003851 GO:0003677|GO:0006355
Ssu4g1709 482 PANTHER CYCLIC DOF FACTOR 2 1 480 IPR045174 GO:0003700|GO:0006355
Ssu4g1709 482 MobiDBLite consensus disorder prediction 42 72 - -
Ssu4g1709 482 PANTHER CYCLIC DOF FACTOR 3-LIKE 1 480 - -
Ssu4g1709 482 ProSitePatterns Zinc finger Dof-type signature. 108 144 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1709 Ssu-Chr4 30104819 30107338 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1709 7 480 C2C2-Dof Transcription Factor Family AT5G39660 35.636 3.01e-65 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu4g1709 zf-Dof 6.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1709 - - gmx:100813787 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1709 4 30104819 30107338 Ssu9g0382 9 18806561 18809350 PCT