Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0427 ATGGAGATGGAGAAAAGGCGTTCCAAGGGAAGCTTCCTCAGCTTGTTTGATTGGAACTCCAAATCTCGAAAGAAGCTGATTTGGAACGATCCTGAGGTTTCAAAGCAAGGGAAGGAAAATGTGGAGAACTTACCAAAGTCACAGCTCACTAGGATAAAGGTGGATGAAATTGGAGCAAGTCCAAGTAACATTCCAAGTTGTGATTTTGACAGCACCCTCTCAATTTGTAGTGATGAAGGATATGGGAGTAAAGCCCCTGGGTTAGTAGCGAGACTCATGGGTTTGGATTCGTTGCCAGCTGCAGCAGTCGCTGAGATCTCCTGCACTTCATTGTATGGCTCTAAATCTAATGGAGCTTCTCATTGTAATGAGGGTGCTCTTCACTCAGTGGATGACTTTCGCCCTGCAGACTACATAAACACACCACTTAAGCTGGAGAAGACTTGCTTGGATGCCGTGGAGTCAAGGGCACGAAAAGTGGAAAACCTTCCAATAAAGAGATTTCAAACTGAAGTGTTGCCTCCAAGGTCAGCTAAACCCATTCCAGTTACTCACAATAAACTTTTGTCTCCTATCAAGAGTCCTGGTTTTCTGCCACCAAAAAATGCGGCTCACGTAATGGAGGCAGCTGCTAAGATAATTGAGGCAAGCCCTCGGCCATATTTGAGGAATAGAACGGCGTCAACCGGGCCTTCATCTGTTCCCTTGAGAATTCTCAACTTGAAAGAGAGATTGGAAGCTGCACAATATGCATCCTTGCCTGGAAAGCCCGTGGATCTGAGCAGTGCCTATCCTGCAAATGGTAAGCTTAGTGAGAGGAGCAGTAATTTGTATAAATGCACTTCAGCATTCAAGGGTTCAAGAGGTTCAGAAAAAAATAGTTCTTGCCATTTAGCAAGTAAAGGAAAATCAATTTCACTTGCAATACAAGGCAAAAACAATGCTCAAAGTAGAGATACATTGATTTCAAATGGTAATAGGAAATGTATGAAACAGAAGGAGAAGAATGAGATAAAGTCAAAGCAGCTCTCAAGGAGCCAGAAACCAAATACACAACAAGCTTTGCAGCAGAGACCTTGCTCAAGCCGGAATAGCAGTGTGCTTGGGCAGAATAATCAAAAGCAAAATAACATGACCACCAAAGGTAAATCAACTACAAAAATAGATTCCAATAAGCCAACAACACGAGCATCATCTTCAGAAACGTCTACTGGAATAAGGAAGACAAAAAACAAGGGTGCTATAACTGCCAATATTCAGCCTAAAAGGTCAAGCAACAGGGCAACAGATAACCAAAAGGAGTTTCTACGATCCAAAACAGAGATTAtttcccaaaagaaaaaatatatcagCAGAGATGTTCATGAGGCAAGAGATCCTGATAATGcagtaaataattttggaagtaAGTCCATTAAATGCAATTTTACAACTGATGGAAGTTTTGATCAGGATGCATTTAACATGAAAGAAAGCAAGGATGTTATTTCATTTACATTTACATCTCCCTTGAGGAGAAATATGCCTGAGTCTTCATCCTCTACTGAGCAAGTGATGGGAACCAGAAATAGAATTGATGTCAACTCTCATGGGCATAGTGATAATCTTTGTCccaaaaatttatcattatctCCACCCGGGCTACATATGATAGATAGTGATGCTTTAAGTGTCCTGTTGGACAAAAAGCTGCAAGAATTGACATCTAGAATTAACTTACCTCAATGTACCCTGGCCACAGAGGGGTCTTCTACTGGTCTGAGATCTACCGTGCAAGACAAAGTTCCCAGTGTGGCAAGCACCACACCTAAGGAACAAGACAAAAGCTTTTGCCCTGACTTTTGTAGTGATAAACTGGATAGCATGCATAACTCTCATTGTTGTTCAAGTGATGATCCAGTGCTTAACATGAATCAGCAACTGCAGACATCAGAAGTAAGTGAAGATCGTAGCTGTAGCAGCAACAGTGAAAGTGGAAATGATCTAGTTTGTTGGCATTCCACTGCTGTTGCAGGTTTTAAAACTCCGTTTGTCAGCGAAAGTTACTTGGATAGTGAAGACAGTGCATATGGCAGCACAGTTTATTCTTCCACGCAAGATGAAGAAGTATCCAATTTTTCCCAGATAAACGAATCTGTATCACTTGAAAATGAGGTGAAAGGGTCAGAGCAAAGCTCTTCCACATTTTGGGGTCGAAATATGACTGTCAAACAAACAAGTGGAATATCAAATTTGGTTGATTTTGAAAGATCAAGTAACATGGAACTTGAATATGTACAGGATATTCTTGGCAATGCAGAGTTTATGGCAGAAGAATTTGTCATGGGTCAAACTAGTACAGTCATCATGCCAAATCTCTTTGATCTGTTGGAGAATCGGAATTATGGAACAGAAAACTATGGAGAAGAGCACACCAAGCTTGAAAGGAAGGTTATATTTGACTGTGTGAGCGAGTTCCTAGAGTTGAGATGTGAGCAAGCTTTCATTGGAACGTGCAAAGCATGGCCTGGATGGGCGATGTCAGTTCAGAGGAAGAGCTGGATGGCAGAGGAAATGTACCAGGAGATGCTGGGTTTTAGAAGCATGGAAGAGGTTATGGTGGATGAGCTTGTTGACAAGGACATGAGCTCTGGATGTGGGAAATGGCTTGACTTTGATGTTGAAGCATTTGAAGAGGGTTTAGAGGTTGAGGGGGACATACTAGCTTATTTGATTAATGAATTGGTTTCTGATTTGTTACTTGTTTAA 2748 0.4079 MEMEKRRSKGSFLSLFDWNSKSRKKLIWNDPEVSKQGKENVENLPKSQLTRIKVDEIGASPSNIPSCDFDSTLSICSDEGYGSKAPGLVARLMGLDSLPAAAVAEISCTSLYGSKSNGASHCNEGALHSVDDFRPADYINTPLKLEKTCLDAVESRARKVENLPIKRFQTEVLPPRSAKPIPVTHNKLLSPIKSPGFLPPKNAAHVMEAAAKIIEASPRPYLRNRTASTGPSSVPLRILNLKERLEAAQYASLPGKPVDLSSAYPANGKLSERSSNLYKCTSAFKGSRGSEKNSSCHLASKGKSISLAIQGKNNAQSRDTLISNGNRKCMKQKEKNEIKSKQLSRSQKPNTQQALQQRPCSSRNSSVLGQNNQKQNNMTTKGKSTTKIDSNKPTTRASSSETSTGIRKTKNKGAITANIQPKRSSNRATDNQKEFLRSKTEIISQKKKYISRDVHEARDPDNAVNNFGSKSIKCNFTTDGSFDQDAFNMKESKDVISFTFTSPLRRNMPESSSSTEQVMGTRNRIDVNSHGHSDNLCPKNLSLSPPGLHMIDSDALSVLLDKKLQELTSRINLPQCTLATEGSSTGLRSTVQDKVPSVASTTPKEQDKSFCPDFCSDKLDSMHNSHCCSSDDPVLNMNQQLQTSEVSEDRSCSSNSESGNDLVCWHSTAVAGFKTPFVSESYLDSEDSAYGSTVYSSTQDEEVSNFSQINESVSLENEVKGSEQSSSTFWGRNMTVKQTSGISNLVDFERSSNMELEYVQDILGNAEFMAEEFVMGQTSTVIMPNLFDLLENRNYGTENYGEEHTKLERKVIFDCVSEFLELRCEQAFIGTCKAWPGWAMSVQRKSWMAEEMYQEMLGFRSMEEVMVDELVDKDMSSGCGKWLDFDVEAFEEGLEVEGDILAYLINELVSDLLLV 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0427 915 MobiDBLite consensus disorder prediction 325 433 - -
Ssu4g0427 915 Pfam Domain of unknown function (DUF4378) 755 907 IPR025486 -
Ssu4g0427 915 MobiDBLite consensus disorder prediction 328 342 - -
Ssu4g0427 915 Pfam DUF761-associated sequence motif 77 101 IPR032795 -
Ssu4g0427 915 MobiDBLite consensus disorder prediction 343 426 - -
Ssu4g0427 915 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 1 915 - -
Ssu4g0427 915 PANTHER DUF4378 DOMAIN PROTEIN 1 915 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0427 Ssu-Chr4 6986937 6990781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0427 3 913 TRM (TON1 Recruiting Motif) Superfamily AT5G26910 32.286 1.19e-109 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0427 - - gmx:102663635 1524.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0427 4 6986937 6990781 Ssu7g1777 7 36253278 36257049 PCT