Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0108 ATGCACAAATTCCGAGCTGTTTATTCTGAGGAGGCTGGACTAGTGAGATCCATGGAAGGGATAGGTCCCAATTCATGCACAAGGCCAGTGTTAGAGAAGAAAGCAAGACCACAAGAGCAATTAAATTGTCCAAGGTGCAGTTCCACCAACACAAAGTTCTGTTATTACAACAACTACAGCCTCACACAGCCCAGATACTTCTGCAAGACTTGTAGAAGGTATTGGACAGAAGGTGGGTCTCTCAGAAACGTCCCCGTTGGAGGTGGCTCTAGGAAGAACAAGAAGGTCACCTCATCTGTATCACCATCATTATCTAAGGTTCCTGACTTGAATCCACCAAGCCTCTCATCAGTCTCAGCTATTTCTTCCAAAAACCCTAAAATGCAAGGAGTCCATGACCTTAATTTGGCTTTTCCTGCAGCTATGGACAAGTATCATGGCATGTCTCCATATTTTGAGATGCCAAAACTTGAAATTGGTAACAGTACTAGTCACCACCATAGCCCTTCTTCTGCTCCAACTTCTCTTTCAGCTGTTGATCTACTACGGTCTGGCATGGCTTCTAGGGGTTTGAATCCTTATGTTCCTAATTCCTTTATGTCAAGCTCAGATTCCCTTTACCCACCTGGCTATCCCATGCAGGAAATTAAACCAAACCTTAGCTTTTCAGTTGATGGGTTTGGAAATAGATCGTATGGGGTTCAAGAGAATGGTGGTGGGAGGCTTTTGTTCCCTTTTGGAGACATCAAGCAGCTTTCTGCAGGTGTTGAAGGGGAACACAATAAAGAACAAGGAAATAATTCAACTGGTTATTGGACTGGTATCATTGGTGAAGGGTCGTCAtggtaa 849 0.437 MHKFRAVYSEEAGLVRSMEGIGPNSCTRPVLEKKARPQEQLNCPRCSSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKVTSSVSPSLSKVPDLNPPSLSSVSAISSKNPKMQGVHDLNLAFPAAMDKYHGMSPYFEMPKLEIGNSTSHHHSPSSAPTSLSAVDLLRSGMASRGLNPYVPNSFMSSSDSLYPPGYPMQEIKPNLSFSVDGFGNRSYGVQENGGGRLLFPFGDIKQLSAGVEGEHNKEQGNNSTGYWTGIIGEGSSW 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0108 282 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 20 276 IPR045174 GO:0003700|GO:0006355
Ssu4g0108 282 ProSiteProfiles Zinc finger Dof-type profile. 41 95 IPR003851 GO:0003677|GO:0006355
Ssu4g0108 282 PANTHER DOF ZINC FINGER PROTEIN DOF3.7 20 276 - -
Ssu4g0108 282 ProSitePatterns Zinc finger Dof-type signature. 43 79 IPR003851 GO:0003677|GO:0006355
Ssu4g0108 282 MobiDBLite consensus disorder prediction 92 117 - -
Ssu4g0108 282 MobiDBLite consensus disorder prediction 82 117 - -
Ssu4g0108 282 Pfam Dof domain, zinc finger 39 95 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0108 Ssu-Chr4 1733388 1734771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0108 33 282 C2C2-Dof Transcription Factor Family AT3G61850 52.015 2.37e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu4g0108 zf-Dof 4.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0108 - - gmx:100775598 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0108 4 1733388 1734771 Ssu4g0108 4 1733388 1734771 ECH
Ssu4g2976 4 76090335 76091159 Ssu4g0108 4 1733388 1734771 ECH
Ssu4g0108 4 1733388 1734771 Ssu4g2976 4 76090335 76091159 PCT