Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2726 ATGGACTCGGAGGATGATATGCACGACGCCAACGACGTGGAGTCCCTCGAGGACGATTTCTACAGTGGCGAGACCGAAGATGCTCCCATGGACTACTACAGCGACTACGATGACGACGCCGGTGATTACTTCGACTATGCCGACAGGATTGAGTCTCGTCGCCCTGAGCAAAATTTTAGCATCTTGAATGAATATGATATCCGACTGAGACAGGAAGATGACATCACTAGAGTAGCAACGGTTCTTTCCATATCAAGGGTTCCTGCAAGCATACTACTACGTCACCACAATTgGAGCGTCAGTAGAGTGCATGATGCGTGGTTTGCTGATGAAGAACGAGTCCGAAAAGCAGTTGGCTTGTTGGAGAAGCCAATTGTCCAGCATCTTAATACTAGTGAGCTTACTTGCGGTATCTGTTTTGAAAGTTATCCTCATGCTAGGATTGAAATGGCTTCCTGTGGTCATCCCTACTGTATCTCATGCTGGGAAGGCTATATCAGTACATCCATTAATGATGGTCCTGGATGTTTGATGCTGAGATGTCCGGATCCCACTTGTGCTGCTGCTGTTGATCAAGATATGATTAATCGTTTAGCATCTGATGAAGATAAGCAGAAGTATGCACGATACCTTCTTAGATCTTATATAGAAGACAATAAGAAGTCCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTTACTTTTGATGCTGGTAGTAGTGGAAATTATGATGTCTCTTGCCTCTGTTCGTATAGCTTTTGTTGGAATTGCACTGAGGAGGCTCATCGTCCAGTGGACTGTGGCACTGTGGCAAAGTGGATTTTGAAGAACAGTGCAGAGTCTGAAAACATGAATTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGCAAGCGaccaattgaaaaaaatcaagGGTGCATGCACATGACGTGCACTCCGCCctgtaaatttgaattttgctgGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGTGGTTTTTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAAGGAGTGTATGATGATACTGAAAGAAGAAGGGAAATGGCAAAGAATTCGCTAGAGAGATACACACATTATTATGAGCGGTGGGCCAGCAATCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTACAGCAGATGCAAGCTGTTCATATTGAGAAGCTTAGTGACATACAGTGTCAGCCTGAATCACAGCTTAAGTTCATAACTGAGGCCTGGCTACAAATAATCGAGTGTAGACGAGTGCTGAAATGGACATATTCATATGGGTACTATTTACCGGAGCATGAGCATGCAAAAAAACAGTTCTTTGAGTACTTACAAGGTGAAGCAGAATCTGGTCTGGAGAGACTTCATCAATGCGCTGAAAAGGAACTACAGCCATTCCTATGTGCTGATGATCCATCTAGAGAATTCAATGACTTTCGTACAAAGCTAGCTGGATTGACTAGTGTGACTAGAAACTACTTTGAGAATTTAGTAAGGGCATTAGAGAATGGTCTATCTGATGTGGATAGTAATGGAGCTGCCTTCAGCAAAGCAACAAGCTCAAAAAATGCTGCTGGGAGCAGTAAGGTGAGAGCCGGAAGAGTAAAGGGAACTTTACGAACCAGCACGTCCAGCAGAATGAATGATGATAATCATTGGTCTTGTGAGCATTGTACCTATGCAAATGTCAAATCTGCCACCACATGCCAGATGTGCTATCAACCCCGTCGATGA 1767 0.4335 MDSEDDMHDANDVESLEDDFYSGETEDAPMDYYSDYDDDAGDYFDYADRIESRRPEQNFSILNEYDIRLRQEDDITRVATVLSISRVPASILLRHHNWSVSRVHDAWFADEERVRKAVGLLEKPIVQHLNTSELTCGICFESYPHARIEMASCGHPYCISCWEGYISTSINDGPGCLMLRCPDPTCAAAVDQDMINRLASDEDKQKYARYLLRSYIEDNKKSKWCPAPGCEYAVTFDAGSSGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLQQMQAVHIEKLSDIQCQPESQLKFITEAWLQIIECRRVLKWTYSYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQPFLCADDPSREFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGAAFSKATSSKNAAGSSKVRAGRVKGTLRTSTSSRMNDDNHWSCEHCTYANVKSATTCQMCYQPRR 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2726 588 ProSiteProfiles TRIAD supradomain profile. 132 346 IPR044066 -
Ssu3g2726 588 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 536 - -
Ssu3g2726 588 Gene3D - 264 519 - -
Ssu3g2726 588 SUPERFAMILY RING/U-box 131 217 - -
Ssu3g2726 588 SMART ibrneu5 205 268 IPR002867 -
Ssu3g2726 588 SMART ibrneu5 272 342 IPR002867 -
Ssu3g2726 588 ProSitePatterns Zinc finger RanBP2-type signature. 564 583 IPR001876 -
Ssu3g2726 588 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 536 IPR031127 GO:0004842|GO:0016567
Ssu3g2726 588 ProSiteProfiles Zinc finger RanBP2 type profile. 560 588 IPR001876 -
Ssu3g2726 588 SUPERFAMILY RING/U-box 287 335 - -
Ssu3g2726 588 SMART zf_4 562 586 IPR001876 -
Ssu3g2726 588 SUPERFAMILY RING/U-box 206 275 - -
Ssu3g2726 588 MobiDBLite consensus disorder prediction 1 32 - -
Ssu3g2726 588 CDD RING-HC_RBR_TRIAD1_like 136 186 - -
Ssu3g2726 588 ProSiteProfiles Zinc finger RING-type profile. 136 180 IPR001841 -
Ssu3g2726 588 Pfam IBR domain, a half RING-finger domain 285 333 IPR002867 -
Ssu3g2726 588 Pfam IBR domain, a half RING-finger domain 205 268 IPR002867 -
Ssu3g2726 588 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 216 IPR013083 -
Ssu3g2726 588 Pfam Ariadne domain 355 517 IPR045840 -
Ssu3g2726 588 SUPERFAMILY Ran binding protein zinc finger-like 560 587 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2726 Ssu-Chr3 81460957 81469059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2726 17 587 ARIADNE family AT1G65430 69.416 0.0 833
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2726 K11968 - gmx:100784195 1139.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0385 8 6115153 6122181 Ssu3g2726 3 81460957 81469059 PCT