Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2624 ATGGTTTTCTCCTCTATTCCAGTCTTTGTAGATCCTCCCAATTGGCAGCAGCAACCAAACCATCCTCAAGCAAATGGCAGTGATAACCCTCAGCTTCTTCTACCTTTGCCCCCACAGCAACCTCATGTGGGAGGTTCTGTGGGTTCAATCAGGCCAGGGTCCATGGCAGATCGAGCTAGGCTAGCTAAGATACCACCTCCTGAAGCAGCTCTCAAGTGTCCACGTTGTGAATCCACCAACACTAAGTTTTGCTATTTCAATAACTATAGCCTCACTCAACCGCGCCACTTCTGCAAGACTTGTAGGCGTTATTGGACAAGAGGGGGTGCTCTAAGAAACGTTCCTGTGGGTGGAGGGTGCCGCAGGAACAAGAAGAACAAAAGGAGTCGCTCTAAATCTCCTGCGTCATCCGAGAAACAAACAATCTCGGGTTCCCCAAGTGCAATCCCCTCTGGTGGAACCACTCACGAGCTAATCGGCCAGTTGCCACAACCTCCTAACCTTCCCTTCATGGCATCCCTTCAGAACCTGAACCGTTATGCTGTTGGAAACATGGGTCTCGGGTTGCGTGAGATTCACGGACAGAACGATCACATGGGGTTTCAaattggtggtggtggaggaggaggaatGGATCAGTGGCGCTTCCAGCAGGTTCCTTTCTTGAACGGCTTTGAATCAACTCCGGCTGGCTCATACCCTTTTCAAAATGAAAGCATGGAAGCACCTTCTGGTTTGGTTGGTGATGTGGCAACCAGTTCTAGGGTTTCTCAGCTGCCATCAGTTAAAATGGAACAAAGTGGAGCTATGAATTTGTCAAGATCATCACTGAGTGTCTCTGAAAATAACCAATACTATTCGTGGACTGATATGTCAGGTCTTGCCTCTTCTTCCGCTGGTCATCTCTTGTAA 912 0.4737 MVFSSIPVFVDPPNWQQQPNHPQANGSDNPQLLLPLPPQQPHVGGSVGSIRPGSMADRARLAKIPPPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSRSKSPASSEKQTISGSPSAIPSGGTTHELIGQLPQPPNLPFMASLQNLNRYAVGNMGLGLREIHGQNDHMGFQIGGGGGGGMDQWRFQQVPFLNGFESTPAGSYPFQNESMEAPSGLVGDVATSSRVSQLPSVKMEQSGAMNLSRSSLSVSENNQYYSWTDMSGLASSSAGHLL 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2624 303 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 300 IPR045174 GO:0003700|GO:0006355
Ssu3g2624 303 Pfam Dof domain, zinc finger 70 125 IPR003851 GO:0003677|GO:0006355
Ssu3g2624 303 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 5 300 - -
Ssu3g2624 303 MobiDBLite consensus disorder prediction 11 53 - -
Ssu3g2624 303 ProSitePatterns Zinc finger Dof-type signature. 73 109 IPR003851 GO:0003677|GO:0006355
Ssu3g2624 303 MobiDBLite consensus disorder prediction 115 164 - -
Ssu3g2624 303 ProSiteProfiles Zinc finger Dof-type profile. 71 125 IPR003851 GO:0003677|GO:0006355
Ssu3g2624 303 MobiDBLite consensus disorder prediction 11 33 - -
Ssu3g2624 303 MobiDBLite consensus disorder prediction 135 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2624 Ssu-Chr3 79796315 79797422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2624 1 297 C2C2-Dof Transcription Factor Family AT2G37590 40.059 2.22e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu3g2624 zf-Dof 3.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2624 - - gmx:100816635 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2624 3 79796315 79797422 Ssu3g2624 3 79796315 79797422 ECH
Ssu8g0471 8 7421378 7422448 Ssu3g2624 3 79796315 79797422 PCT