Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2552 ATGGATCCTTCCAGTGGACAACACCAGCAAATGTCTAGCCAGTCATTGGAGAACATGTTGGCATGTTCAAAAGCACAGCAGGAGAGGAAGCCAAGGCCTCAGCCGGAACAAGCTCTAAAGTGCCCCAGATGTGACTCCACCAACACCAAATTTTGTTACTACAACAATTACAGCCTTTCTCAGCCAAGGTATTTCTGCAAGTCTTGCAGGAGATATTGGACCAAAGGAGGGACACTGAGGAATGTTCCTGTGGGAGGAGGGTGCAGGAAGAACAAGaggtcatcatcatcttcaacaTCAAAGAGAGTTCAAGATCAAGCATTCGCACCCAATCCCAACCCACTCACTGGCCTCTCTTCATTGTCCTATGACTCCAGTGACCTCACCCTTGCATTGGCGAGGCTGCAAAAGCAGTCATGTGGGCAATTGGGTTATGATGACCATGATCTTTCAATTTTGGGGAACCCCACAAGCACCCCATGCGATATCCTTGGCAATCCTGGCATGAACCCCTCATCCACTAACCCAGGGTTCTTGGATGCCCTTAGAAGTGGGTTCCTTGGAAGCCAAAATAATCTGCAGAATCTGTACTATGGATATGGGAATGGGGACATGGGGGAGGTGGACAATGGCAATGCTTGTGGTGGGGTTGGGGTTAGTGGAGAGATGATGCTGCCTTATGATCAAGAAATGACTGTTGCCACCACACAGGCAGTGACAGTCACTACCATGAAACAAGAACTTTGCAATGGGAGGGAACAAAGTGAGAGTAGAGTGTTGTGGGGTTTCCCATGGCAGCTCAATGGAGACACAAACATGGGTGAACTTGACTCAGGAAGAGCCAGTTGGAATGGTCTCACTTCATCATGGCATGGACTTCTCCATAGTCCCCTAATGTAG 900 0.4778 MDPSSGQHQQMSSQSLENMLACSKAQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSTSKRVQDQAFAPNPNPLTGLSSLSYDSSDLTLALARLQKQSCGQLGYDDHDLSILGNPTSTPCDILGNPGMNPSSTNPGFLDALRSGFLGSQNNLQNLYYGYGNGDMGEVDNGNACGGVGVSGEMMLPYDQEMTVATTQAVTVTTMKQELCNGREQSESRVLWGFPWQLNGDTNMGELDSGRASWNGLTSSWHGLLHSPLM 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2552 299 MobiDBLite consensus disorder prediction 1 40 - -
Ssu3g2552 299 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Ssu3g2552 299 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Ssu3g2552 299 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 7 298 - -
Ssu3g2552 299 MobiDBLite consensus disorder prediction 84 115 - -
Ssu3g2552 299 MobiDBLite consensus disorder prediction 90 115 - -
Ssu3g2552 299 MobiDBLite consensus disorder prediction 1 22 - -
Ssu3g2552 299 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Ssu3g2552 299 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 298 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2552 Ssu-Chr3 78190675 78192180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2552 1 299 C2C2-Dof Transcription Factor Family AT2G28510 40.476 6.89e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu3g2552 zf-Dof 6.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2552 - - gmx:100799737 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2552 3 78190675 78192180 Ssu3g2552 3 78190675 78192180 ECH
Ssu8g0533 8 8593082 8594619 Ssu3g2552 3 78190675 78192180 PCT