Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1819 ATGGCCACACTCTTCGAATCCCTCGCCGTCGTTCCTCTCCCCTTCGCCGCCTTCTCCCCCGTCGCCGCCCGCCGCACCTCCGCTAAGCTGCCGCACCACGCCGGCCTCAGACTCAGGCCCGCCGCCGCCACGCGCTTCGTCGCGTCCCCCACTCCCAGAATCGCTTCACGCGCCGCGCGCGTCGTGTGCGAGGCTCAGAATACCGCCGTCGATGTGTCTCCTATTACTGATGCGAATTGGCAATCGCTTGTCCTTGAATCTGAATCTGCTGTTTTGGTTGAATTCTGGGCTCCATGGTGTGGTCCCTGCCGAATGATTCACCCTATAATTGATGAGCTAGCAAAACAATATGCTGGGAAGCTCAAATGTTACAAACTTAACACTGATGAGAGCCCTTCAACCGCTACTCGATATGGGATTCGAAGCATCCCAACTGTTATAATCTTCAAGAATGGTGAGAAGAAAGATACAGTTATTGGTGCTGTGCCCAAGTCAACATTGACCACCAGCATAGAAAAATTCTTATGA 528 0.5379 MATLFESLAVVPLPFAAFSPVAARRTSAKLPHHAGLRLRPAAATRFVASPTPRIASRAARVVCEAQNTAVDVSPITDANWQSLVLESESAVLVEFWAPWCGPCRMIHPIIDELAKQYAGKLKCYKLNTDESPSTATRYGIRSIPTVIIFKNGEKKDTVIGAVPKSTLTTSIEKFL 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1819 175 Pfam Thioredoxin 72 172 IPR013766 -
Ssu3g1819 175 PRINTS Thioredoxin family signature 99 108 - -
Ssu3g1819 175 PRINTS Thioredoxin family signature 91 99 - -
Ssu3g1819 175 PRINTS Thioredoxin family signature 139 150 - -
Ssu3g1819 175 PANTHER GEO12009P1 2 175 - -
Ssu3g1819 175 TIGRFAM thioredoxin: thioredoxin 76 174 IPR005746 GO:0015035
Ssu3g1819 175 Gene3D Glutaredoxin 72 175 - -
Ssu3g1819 175 ProSiteProfiles Thioredoxin domain profile. 52 175 IPR013766 -
Ssu3g1819 175 CDD TRX_family 78 172 - -
Ssu3g1819 175 PANTHER THIOREDOXIN M-TYPE PROTEIN 2 175 - -
Ssu3g1819 175 ProSitePatterns Thioredoxin family active site. 92 110 IPR017937 -
Ssu3g1819 175 SUPERFAMILY Thioredoxin-like 63 175 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1819 Ssu-Chr3 56993283 56996093 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1819 3 56993283 56996093 Ssu3g1819 3 56993283 56996093 ECH