Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1818 ATGGCAATTTGTTCCTCACCTTCATCATCGTCATCGTCGTCGTCGTCATCTTCTTCGTCGTCGTTTGATTCTTCGAGCAACGCGAAGGTGTGGATCATCCATGGCATTGTGGCTGGAGTGGCGATTGCTGCGGCAGTGGGTGCACGCGCCTACATGACCCGATTCAACAAGTTTCGGAGCCGGGTCGTGGGCATCATACCCGCCCGATTTGCTTCATCGCGGTTCCAGGGAAAGCCTCTCGTTCAAATCCTTGGCAAGCCCATGATCCAGAGAACATGGGAAAGGGCAAAGCTAGCTGCTACATTGGATCATGTTGTTGTGGCAACTGATGATGAAAAGATTGCTGATTGCTGTCGAAAATTTGGAGCTGATGTTATAATGACATCAGAATCGTGCAGAAATGGTACTGAGCGCTGCAATGAAGCCCTACAGAAGCTTgggaaaaaatatgatattgttGTCAACATTCAGGGTGATGAGCCACTTATTGAACCTGAGATAATAGATGGTGTTGTGAAAGCTTTGCAgGCAGCTCCAGATGCAGTGTTCAGCACTGCAGTCACATCTTTAAAGCCTGAAGATGCACATGATCCAAATAGAGTGAAATGTGTGATAGATAATCGTGGTTATGCCATCTATTTTTCACGAGGATTAATCCCATTCAACAAGTCAGGGAAGGTCAATCAGCAGTTCCCGTATTTGCTTCATCTTGGGATTCAGAGCTATGATGCAAAGTTTCTAAAGATATACCCTGATCTTCAACCTACTCCATTGCAACTCGAGGAGGATTTGGAACAGCTTAAAGTCCTTGAGAATGGCTACAAGATGAAGGTGATAAAAGTTGATCACGAGGCTCATGGTGTTGATGCTCCTGAAGATGTTGAAAAGATAGAATCTCTAATGCGCGAGAGGAACTTGTCTTGA 924 0.4481 MAICSSPSSSSSSSSSSSSSSFDSSSNAKVWIIHGIVAGVAIAAAVGARAYMTRFNKFRSRVVGIIPARFASSRFQGKPLVQILGKPMIQRTWERAKLAATLDHVVVATDDEKIADCCRKFGADVIMTSESCRNGTERCNEALQKLGKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAHDPNRVKCVIDNRGYAIYFSRGLIPFNKSGKVNQQFPYLLHLGIQSYDAKFLKIYPDLQPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESLMRERNLS 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1818 307 CDD CMP-KDO-Synthetase 61 300 IPR004528 GO:0008690
Ssu3g1818 307 Pfam Cytidylyltransferase 64 274 IPR003329 -
Ssu3g1818 307 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 51 302 IPR029044 -
Ssu3g1818 307 TIGRFAM kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 64 295 IPR004528 GO:0008690
Ssu3g1818 307 SUPERFAMILY Nucleotide-diphospho-sugar transferases 62 304 IPR029044 -
Ssu3g1818 307 Hamap 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 60 302 IPR004528 GO:0008690
Ssu3g1818 307 PANTHER 3-DEOXY-MANNO-OCTULOSONATE CYTIDYLYLTRANSFERASE 23 307 - -
Ssu3g1818 307 MobiDBLite consensus disorder prediction 1 23 - -
Ssu3g1818 307 PANTHER BNAA05G35640D PROTEIN 23 307 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1818 3 56979623 56985709 Ssu3g1818 3 56979623 56985709 ECH