Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1817 ATggaccacaacaacaacaacagggTGTCAAGAATTCATGCATTCTCATCACCAGCGCCATCTTCCCCTCCCATGCTTTCCTTCATTGCAGCTCTCGCCACCGCAACGCTAATCTTCATGTGCCTCTATGTTTTCTCAGCCATTGTTTCTACGGTCATTATTGTAGTCCTTTACATCATCACCATCTTCCTTTGTAGGTTTATGCATGATATGCGTGAATTGAGAGAAAGAACCTCTTTTCATGCCCAAACCCCACAAAATAACCAAAGGGTAGTGAGAATTTTCAATAAGCTTTTCTGGGTTGTTGAGGAAAAAAAGGGGAGCCAGAGGCAACAAGTTAAGAAGCTGCTAGGATCTATTGTGTGTTTTGGAAACCAAGCAATGGCATCATTATGTGACAATGAATGTGCAATTTGCTTGGAGGATTTCAAGAAGGGAGAAGAATGCCTCATTTTTTCAGTTTGTGGCCATACTTTCCATTGTGATTGTATCAACTATTGGTTACAGGAAAAGCCTAGTTGCCCAATTTGTCGTCATTATGTTCCATCATCGGCCCCCCATTGA 564 0.4007 MDHNNNNRVSRIHAFSSPAPSSPPMLSFIAALATATLIFMCLYVFSAIVSTVIIVVLYIITIFLCRFMHDMRELRERTSFHAQTPQNNQRVVRIFNKLFWVVEEKKGSQRQQVKKLLGSIVCFGNQAMASLCDNECAICLEDFKKGEECLIFSVCGHTFHCDCINYWLQEKPSCPICRHYVPSSAPH 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1817 187 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 1 181 - -
Ssu3g1817 187 SUPERFAMILY RING/U-box 126 183 - -
Ssu3g1817 187 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 181 - -
Ssu3g1817 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 184 IPR013083 -
Ssu3g1817 187 SMART ring_2 136 177 IPR001841 -
Ssu3g1817 187 SUPERFAMILY ABC transporter transmembrane region 25 107 IPR036640 GO:0005524|GO:0016021
Ssu3g1817 187 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Ssu3g1817 187 Pfam Ring finger domain 134 178 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1817 Ssu-Chr3 56925045 56925608 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1817 26 184 C3H Transcription Factor Family AT1G53010 30.233 1.71e-17 74.3