Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1797 ATGGGAGATATTAGCTTGAGGCTATGGTTAGATAAATCTGAACGATCCGTGAATGTCTTTGAATGCTTGCACATATTTAGGCAAATAGTAGAAATTGTTCATGTGGCTCATTCTCAAGGAATTGTTCATAATGTGATGCCCTCCTGCTTTGTCATGTCATCTTTCAACCATGTCTCATTTATTGAGCCAGCAACTTGTTCAGATACTGGCTCAGATACTTTGAAAGAAGCTGTTGAGGTTAAAACTTCAACACCTACCTCTAGCTATGATATGCATCAGCAGAGATTTTTAGGAAGTGAAGATTTTGTGACTGTCAATACTTCAACAGCTTCTTCGTTAGACTCTAGTTCCATGTTGTCAAGTATGGTGTTTGCAGCGCCTGCATCGTTAGTAGATGACgcagaagaaaataaaatggaaagcaGGAAAAAGGATGAGGAAGTTGCAGGAAAGAAGCAATCATTTCCAGAGAAGCAGGCACTGTGGATGGAGGTGAGTTGGTATACTAGTCCTGAAGAGGTAGCTGGTGCTCCAAGTTCCTGTGCTTCAGACGTTTACCGGTTGGGAGTTCTCCTTTTTGAGCTATTTTGTCCACTCAGCTCAAGAGAGGAAAAGAGCAGAACCATGTCCAGCCTAAGACATAGAGTTCTTCCTCCACAGTTACTTCTAAAGTGGCCTAAAGAAGTTTCATTCTGCTTATGGTTATTACATCCTGAGCCTAGTAGTCGTCCAACATTGGGGGAGTTGTTGCAGAGTGAGTTTCTTAATGAACCAAGAGATGATATAGAAGAGTGTGAAGCAGCCGTAAAACTTAGAGAAAAGATAGATAATCAGGAGTTGTTGCTAGAATTCCTTTCGTTAATTCAGCAGAAAAAAGGGGAAGCTGCTGAGAAGTTGCAACATACTATCTCTTTTCTGTGTTCAGATATTGAAGAAGTGACTAAGCAGCAAACTGCATTTAAAGAGATAACTGGCACTGGACTAGGGTATGTTGATTGTTCAACATCAAGTTTCCCATCCATTGCAGTTACTGATAATGAGGATTCTGCTTGTCTAGGGACCAGAAAACGGGTCAGAACTGATCCGTCTGTTGATGACACAGTAGGATGTGATAATAACAGAGGTGATGATCAGAAAAATGACAGAAGTATTCTTTCAAAAAGTCCACGGTTTTTGAAGAACCTCAAGAAACTAGAGTCATCATACTTTTTGACACGATACAAATCAGCCTATCCCTCAGGGAAACTTGTGGTTCAACATTCACCTATGGCTACTGATGATAGAGAGTCTGTTGTTGTGACTGAAAGGAGTTGTTTCAACAAAGTAGCATCAAAAGAGCAGTTCAGGGAGGGCAGTAGTCCATGGACAAATCCTTTCCTTGAGGGTTTGTGCAAGTACCTATCTTTCAGTACGTTAAAGGTTAAGGCTGACCTGAAACAAGGGGATCTTTTGCAGTCTTCCAACCTGGTATGCTCACTCAGTTTTGATCGCGATGCAAAATTCTTTGCTACTGCAGGAGCAAATAAGAAGATTAAAGTATTTGAATGTGACACAACCATAAATGAGGATCGTGATATCCACTATCCAGTAGTGGAGATGGTTAGCCGGTCAACATTGAGTAGTACATGTTGGAATACTTACATCAAACGTCAAATTGCTTCAAGTAATTTTGAAGGTGTTGTACAGTTATGGGATGTGACAAGAAGTCAAGTGCAGTCTGAATTGAGGGAGCATGAGCAAAGGGTATGGTCCATTGATTTCTCATCAGCAGACCCAACATTGTTAGCAAGTGGAAGTGATGATGGTTCTGTCAAGCTATGGAATATCAATCAGGCAGTTAGTGTTGGTACCATCAAAACAAAGGCAAATGTGTGTTGTGTTCAGTTTCCCCTTAATTTTGCTCATTTCCTTGCATTTGGGTCGGCAGATCATCGGATATATTACTATGATCTTCGCAACCTGAAAGTGCCTCTTTGCACATTAGTTGGACATAATAAGACAGTGAGCAACATCAAGTTCGTAGACAGCGTGAGCCTAGTGTCTGCGTCCACAGATAACATGTTGAAGCTTTGGGATTTGTCCATGTGTGCTTCTGGGGTTATAGACTCACCAATTCAATCATTCACTGGTCACATGAACGTTAAGAACTTCGTGGGGTTGTCTGTATCTGATGGTTACATTGCTACTGGTTCAGAGACAAACGAGGTGTTCATATACCACAAGGCTTTTCCCATGCCAGCattatctttcaaattttacagTAGGGACCCTCTTTCTGGGAATGAAGTGGATGATTCTGCACAGTTCATCAGTTCCGTTTGTTGGCGCGGTCAGTCCTCCACCTTACTCGCTGCAAATTCCATAGGAAATGTCAAAATTCTGGAGATGACTTAA 2394 0.4085 MGDISLRLWLDKSERSVNVFECLHIFRQIVEIVHVAHSQGIVHNVMPSCFVMSSFNHVSFIEPATCSDTGSDTLKEAVEVKTSTPTSSYDMHQQRFLGSEDFVTVNTSTASSLDSSSMLSSMVFAAPASLVDDAEENKMESRKKDEEVAGKKQSFPEKQALWMEVSWYTSPEEVAGAPSSCASDVYRLGVLLFELFCPLSSREEKSRTMSSLRHRVLPPQLLLKWPKEVSFCLWLLHPEPSSRPTLGELLQSEFLNEPRDDIEECEAAVKLREKIDNQELLLEFLSLIQQKKGEAAEKLQHTISFLCSDIEEVTKQQTAFKEITGTGLGYVDCSTSSFPSIAVTDNEDSACLGTRKRVRTDPSVDDTVGCDNNRGDDQKNDRSILSKSPRFLKNLKKLESSYFLTRYKSAYPSGKLVVQHSPMATDDRESVVVTERSCFNKVASKEQFREGSSPWTNPFLEGLCKYLSFSTLKVKADLKQGDLLQSSNLVCSLSFDRDAKFFATAGANKKIKVFECDTTINEDRDIHYPVVEMVSRSTLSSTCWNTYIKRQIASSNFEGVVQLWDVTRSQVQSELREHEQRVWSIDFSSADPTLLASGSDDGSVKLWNINQAVSVGTIKTKANVCCVQFPLNFAHFLAFGSADHRIYYYDLRNLKVPLCTLVGHNKTVSNIKFVDSVSLVSASTDNMLKLWDLSMCASGVIDSPIQSFTGHMNVKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSFKFYSRDPLSGNEVDDSAQFISSVCWRGQSSTLLAANSIGNVKILEMT 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1797 797 ProSitePatterns Trp-Asp (WD) repeats signature. 679 693 IPR019775 -
Ssu3g1797 797 Pfam WD domain, G-beta repeat 657 692 IPR001680 GO:0005515
Ssu3g1797 797 Pfam WD domain, G-beta repeat 570 608 IPR001680 GO:0005515
Ssu3g1797 797 SMART WD40_4 654 692 IPR001680 GO:0005515
Ssu3g1797 797 SMART WD40_4 611 650 IPR001680 GO:0005515
Ssu3g1797 797 SMART WD40_4 701 740 IPR001680 GO:0005515
Ssu3g1797 797 SMART WD40_4 568 608 IPR001680 GO:0005515
Ssu3g1797 797 SMART WD40_4 480 515 IPR001680 GO:0005515
Ssu3g1797 797 SMART WD40_4 526 565 IPR001680 GO:0005515
Ssu3g1797 797 ProSiteProfiles Protein kinase domain profile. 1 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1797 797 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 575 610 - -
Ssu3g1797 797 ProSiteProfiles Trp-Asp (WD) repeats profile. 661 694 IPR001680 GO:0005515
Ssu3g1797 797 PANTHER PROTEIN SPA1-RELATED 2 2 797 IPR044630 GO:0009640
Ssu3g1797 797 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 661 694 - -
Ssu3g1797 797 MobiDBLite consensus disorder prediction 362 382 - -
Ssu3g1797 797 PANTHER PROTEIN SPA1-RELATED 3 2 797 - -
Ssu3g1797 797 SUPERFAMILY Protein kinase-like (PK-like) 4 253 IPR011009 -
Ssu3g1797 797 ProSitePatterns Trp-Asp (WD) repeats signature. 595 609 IPR019775 -
Ssu3g1797 797 SUPERFAMILY WD40 repeat-like 485 794 IPR036322 GO:0005515
Ssu3g1797 797 PRINTS G protein beta WD-40 repeat signature 679 693 IPR020472 -
Ssu3g1797 797 PRINTS G protein beta WD-40 repeat signature 595 609 IPR020472 -
Ssu3g1797 797 PRINTS G protein beta WD-40 repeat signature 552 566 IPR020472 -
Ssu3g1797 797 Gene3D Transferase(Phosphotransferase) domain 1 3 265 - -
Ssu3g1797 797 ProSiteProfiles Trp-Asp (WD) repeats profile. 575 617 IPR001680 GO:0005515
Ssu3g1797 797 Gene3D - 461 797 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1797 Ssu-Chr3 55984978 56005177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1797 561 694 Miscellaneous Gene Families AT5G08390 31.618 3.48e-12 68.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1151 8 20465600 20477259 Ssu3g1797 3 55984978 56005177 ECH
Ssu3g1797 3 55984978 56005177 Ssu3g1797 3 55984978 56005177 ECH