Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1792 ATGTCGTCCTCCACCGTCGCCGGAGCCGACACTCCCACCGCATTCCACGCCACTCCCTCGAAAACCCCGTCGAAGGCGAGCAGCCGGAGGCAGCACCCGGATTCGAAGTCCCGGTTCGAGGCGTACAACCGGCTCCAGGGCGCGGCCGTGGCCTTCGGCGAGACGCTGCCGATCCCGGAGATCGTGGCGGTCGGGGGCCAGTCGGACGGGAAGAGCTCCCTCCTGGAAGCGCTCCTGGGGTTCCGCTTCAACGTCCGCGAGGTCGAGATGGGCACGCGCAGACCCCTCATACTCCAAATGGTTCACGACGCCGCCGCTCTCGAACCGCGATGCCGCTTCCAGGAGGAGGATTCAGAAGAGTATGGAAGTCCTGTGGTTTTGGCATCTGCCATTGCAGACATTATAAAGTCCCGAACTGAGGCACTTTTGAAGAAAACCAAGACAGCAGTTTCTCCTAAGCCAATTGTAATGAGAGCTGAGTATGCACATTGTCCCAACCTTACTATTATTGACACACCTGGGTTTGTTCTTAAGGCAAAGAAGGGTGAGCCAGAGAACACGCCTGACGAAATCCTTTCTATGGTGAAGTCCTTGGCTAGTCCTCCTCACCGCATACTCTTGTTCCTTCAGCAAAGTAGTGTTGAGTGGTGCTCCTCATTGTGGTTGGATGCCATTCGTGAAATTGACCCAACATTTAGACGGACAGTGATTGTTGTCTCCAAATTTGATAACCGTCTCAAGGAATTTAGTGACCGGTGGGAAGTGGATCGCTATTTGAGTGCGAGTGGTTACCTTGGAGAAAGCACTCACCCCTTTTTTGTGGCCCTGCCAAAGGATAGGGCCAATGTTTCAAATGATGAGTTCCGCAGGCAGATTTCTCAGGTGGACTCAGAGGTTCTTCATCATCTCCGCGAGGGTGTCAAGGGAGGCTTCGATGAAGAAAAATTCAAGTCCTATATTGGCTTTGGCCGTCTGAGAGATTATTTGGAGTCTGAGCTTCagaagaaatacaaagaagctGCCCCAGCAACCCTTGCTTTGCTTGAGCAACGCTGCAGTGAAGTGACTTCTGAACTTGCTAGAATGGATTCAAAAATACAGGCCACTTCAGATGTTTCCCATCTCAGGAAATTTGCAATGCTGCATACGGCTTCTATCAGTAACCACGTGGGTGCATTGATTGATGGTGCAGCAGACCCTTCCCCTGAGCAGTGGGGGAAAACAACTGTAGAAGAGAGATCACATAGTGGTATTGGGGTTTGGCCTGGTGTCATTGCCGATGTACATCCCCCTAATGCTACTCTTCGTCTTTATGGAGGAGCTGCATTTGAGAGGGTAATGCATGAATTTCGCTGTGCTGCATATTCCATAGAATGCCCCTCAGTGTCAAGGGAGAAGGTTGCAAATATATTACTTGCCCACGCTGGCCGAGGTGGGGGAAGAGGAATAACAGAGGCTGCTGCAGAGATTGCACGAGCTGCTGCTAAATCATGGCTTGCACCTCTTCTTGACACTGCCTGTGACCGGCTTGCTTTTGTCTTAGGAAGTTTATTTGATTTGGCTCTTGAAAGAAACCGCAGTCATGACTCAGAATGTGGGATTAAAGGGGGAAACATGGATGGCTATGTTGGTTTCCATGCTGCTTTAAGATGTGCTTACAGTCGCTTCATTGGGGATCTTGCTAAGCAGTGCAAGCAGCTTGTTAGGCACCACCTTGATTCAGTTACTAGTCCATACTCACAGGTCTGCTACTTTAATGACTTTCAACCATGTTCCAGCCTAAATGCACCCTCTTATAACAAATTCAGCCAGGCTTCAGCCTCTTCATTTTTCCTTGAGTTGAGTGATACTAGTTCAGCTTCCCATGATGTAAGGAGGGATCAGGAAAATATACCTCCAGAAAAGCATGCACAGGAAACCACACCAGGTAAAGCAGCAGAAGCTAGAGATGCTTTGCGAGAAAGCCACATAACTATCCCTGAGACCCCATCTCCTGATCAACCAGGTGATGCAGCATATGGGGTGGTTAAAAAGGAGCTTGGGATTTGCAATGACATGGGACCAAGAAAGAGAGCGTCCAGAATGGGAGGGAATAGCAAAAATTCTGACTATGTTAGAGTGCAAAATGGTGGCATTTTATTTGGAAATGGGGAGAGATCAGGTTCAGCTTACTCAGAAATCTGTTTATCAGCTGCCCAGCATTTTGCACGTATTCGTGAAGTTCTTGTTGAGAGAGGCGTGACATCAACATTAAATTCTGGATTTCTAACCCCTTGCCGAGATCGGCTATTCGTGGCTCTTGGGTTAGATTTATTTGCAGTGAACGATGAGAAATTCATGGACATGTTTGTTGCTCCTGGCGCCATAGATGTGTTACAAAGTGAACGAGAGTCTCTTATGAAGCGTCAAAAGATACTTCATTCTTGCTTGAATGAGTTTAAAAACGTTGCTCGGGCACTTTGA 2463 0.4848 MSSSTVAGADTPTAFHATPSKTPSKASSRRQHPDSKSRFEAYNRLQGAAVAFGETLPIPEIVAVGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDAAALEPRCRFQEEDSEEYGSPVVLASAIADIIKSRTEALLKKTKTAVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILLFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDNRLKEFSDRWEVDRYLSASGYLGESTHPFFVALPKDRANVSNDEFRRQISQVDSEVLHHLREGVKGGFDEEKFKSYIGFGRLRDYLESELQKKYKEAAPATLALLEQRCSEVTSELARMDSKIQATSDVSHLRKFAMLHTASISNHVGALIDGAADPSPEQWGKTTVEERSHSGIGVWPGVIADVHPPNATLRLYGGAAFERVMHEFRCAAYSIECPSVSREKVANILLAHAGRGGGRGITEAAAEIARAAAKSWLAPLLDTACDRLAFVLGSLFDLALERNRSHDSECGIKGGNMDGYVGFHAALRCAYSRFIGDLAKQCKQLVRHHLDSVTSPYSQVCYFNDFQPCSSLNAPSYNKFSQASASSFFLELSDTSSASHDVRRDQENIPPEKHAQETTPGKAAEARDALRESHITIPETPSPDQPGDAAYGVVKKELGICNDMGPRKRASRMGGNSKNSDYVRVQNGGILFGNGERSGSAYSEICLSAAQHFARIREVLVERGVTSTLNSGFLTPCRDRLFVALGLDLFAVNDEKFMDMFVAPGAIDVLQSERESLMKRQKILHSCLNEFKNVARAL 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1792 820 PRINTS Dynamin signature 58 76 IPR022812 -
Ssu3g1792 820 PRINTS Dynamin signature 161 178 IPR022812 -
Ssu3g1792 820 PRINTS Dynamin signature 83 100 IPR022812 -
Ssu3g1792 820 PRINTS Dynamin signature 230 246 IPR022812 -
Ssu3g1792 820 CDD DLP_1 56 342 IPR001401 GO:0003924|GO:0005525
Ssu3g1792 820 MobiDBLite consensus disorder prediction 1 37 - -
Ssu3g1792 820 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 55 342 IPR030381 GO:0005525
Ssu3g1792 820 Pfam Dynamin family 61 241 IPR045063 -
Ssu3g1792 820 PANTHER DYNAMIN 35 819 IPR022812 -
Ssu3g1792 820 PANTHER DYNAMIN-LIKE PROTEIN C 35 819 - -
Ssu3g1792 820 SMART dynamin_3 35 269 IPR001401 GO:0003924|GO:0005525
Ssu3g1792 820 Gene3D - 26 393 IPR027417 -
Ssu3g1792 820 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 349 IPR027417 -
Ssu3g1792 820 Coils Coil 345 365 - -
Ssu3g1792 820 MobiDBLite consensus disorder prediction 1 26 - -
Ssu3g1792 820 MobiDBLite consensus disorder prediction 621 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1792 Ssu-Chr3 55886579 55892550 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1792 3 55886579 55892550 Ssu3g1792 3 55886579 55892550 ECH