Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1677 ATGGCATCCAAAAGGCAAGCATTGGTCATATTTCTCTTATCCCTTTTCACATTCTCTTCCTCACACCCTGACAATGGGGGCATTGCCGTCTACTGGGGCCAAGACAATGGCGATGGCGAATTGACAACCACATGTGACAGTGGAAAATATGCAATTGTGCTCCTCGCTTTTCTCAACACTTTCGGTGCAGACAGAACTCCAACTTGGAACTTCGCTGGCCATTGTGACAATGGTGCCTTGAAAAAGCCAAAGGCATCAAAGTGCTTCTTTCCATCGGAGGAGCCCCTGGCTATTCGGCCTACTCCCTCAGCTCTGGCCGAGGACGCAAAGGACGTGGCCGGCTACCTCTATAAAAACTTTCTCAGTGGCCAATATGGTCCACTAGGAAGTGTCGAGTTGGACGGCATCGATTTCGACATCGAAGTCACTGAGGATCATTGGGACGACCTTGCCAGGGAACTCGACTTTTTCCGACACACAGAAGGGCGTTACTTTTACTTGTCGGCAGCCCCTCAGTGTCCGATCCCAATCTACTATCTCGGCAAAGCCATCGAAACCAAACTCTTCGACTACATCTTTGTTCAATTCTACAACAACCCAGGTTGCGCGTATTCCACTGGCAACATTGCGTCACTGTTGGCGTCGTGGGACGATTGGGTCAAATTGGTTGCGTCCAATAACTCGCTATTTGTGGGCCTGCCAGCGGCCCAAAGTGCAGCTGGAAGTGGTTACATACCACCGGATGTGCTCAACAGTGAGGTGCTTGCGTACGTGAAGACAGCGTCGAACTACGAAGGAGTGATGCTATGGGATAGGTACCGTGATGTTCAATACGACTATAGTGGTAGCATACTGTCCAATGTGCTCAAATCGGCGTTGCCGTCTGTAACGTTGGTTTCGGGCGCAATCTATGAGTGTGTCTCGAAGGCGTTGCACCGCGTCCTTACCCCGGGCTGGGTACTAGGTAGGTGA 972 0.5103 MASKRQALVIFLLSLFTFSSSHPDNGGIAVYWGQDNGDGELTTTCDSGKYAIVLLAFLNTFGADRTPTWNFAGHCDNGALKKPKASKCFFPSEEPLAIRPTPSALAEDAKDVAGYLYKNFLSGQYGPLGSVELDGIDFDIEVTEDHWDDLARELDFFRHTEGRYFYLSAAPQCPIPIYYLGKAIETKLFDYIFVQFYNNPGCAYSTGNIASLLASWDDWVKLVASNNSLFVGLPAAQSAAGSGYIPPDVLNSEVLAYVKTASNYEGVMLWDRYRDVQYDYSGSILSNVLKSALPSVTLVSGAIYECVSKALHRVLTPGWVLGR 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1677 323 Gene3D Glycosidases 101 300 - -
Ssu3g1677 323 CDD GH18_hevamine_XipI_class_III 26 277 IPR045321 -
Ssu3g1677 323 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 133 141 IPR001579 GO:0004553|GO:0005975
Ssu3g1677 323 PANTHER ENDOCHITINASE 4 284 - -
Ssu3g1677 323 SUPERFAMILY (Trans)glycosidases 24 284 IPR017853 -
Ssu3g1677 323 PANTHER III ACIDIC ENDOCHITINASE, PUTATIVE-RELATED 4 284 - -
Ssu3g1677 323 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 26 291 IPR001223 GO:0005975
Ssu3g1677 323 Pfam Glycosyl hydrolases family 18 28 275 IPR001223 GO:0005975
Ssu3g1677 323 Gene3D Glycosidases 26 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1677 Ssu-Chr3 49554067 49555764 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1677 9 288 Glycoside Hydrolase AT5G24090 46.179 4.78e-83 251