Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1664 ATGTGGTTTGTTATGTCTGGGTCCAAACTAGTTTATGCTCTTATCTTGGGTTTTGTGGCTTTGAATTGGACCGAAGTGTTTGAATCCAATGCTCAACTCATACCGCAAGATGAAGTGAAAGCACTACAAGCAATATCGGATAAACTAGGGAACGTGAATTGGAAAGTTACAGAACGTTCCTGCACAGAAGATGGAGGATTTAATGGCcagattaatataaataatgacaTCGTGAGGAATGTCACATGCAGTTGCACTTTCCAAAATAACACAGTTTGCCATGTTGATAACATCTTTCTCAAGGGTCAAAATATATCTGGAGTTTTCCCCAGTGAATTTGGAAATATCACACAACTGAAAGTACTTGATCTTACTCGCAACTATCTCAGTGGCTCACTTCCAACAAATTTTGCTCACAACTCACTGGTCATTTTGTCCCTTCTGGGAAACCGACTCAGTGGTTCAATTCCCACAGGAATTGGTGATATTGTTAGTCTGGAGGAACTGGTCTTAGAATGTAATCAACTTGAAGGACCACTTCCTCCTAGTCTTGGAAATTTGAGCAAGTTGAGGAGACTGCTTCTTTCtgcaaataattttacagggacCATACCAGAAACATTTAGCAAACTAAAGAATCTCACTGATTTTAGGATAGATGGAAGCAGTTTATCCGGACCAGTACCCAGTTTCATTGGGAACTGGACCAAACTTGAGAGATTGGATATGCAGGGAACATCTATGGAAGGCCCAATTCCTCCAACTATATCTCAGTTGACACTTTTGACTGAATTGAGAATAACTGATTTGAATGGACCAACGATGACATTTCCTGATCTGAAGGATTTGAAAAACTTGGAACGACTGGAATTGAGAAATTGCTTAATCACTGGTCCTATTCTAGATTACATCGGTCAAATGACAAACTTGGCTACTTTAGACCTAAGCTTCAACATGTTGACTGGTTCAGTCCCAGATTCAATTCAGGGATTGAATAAGCTAAACTACTTGTTTCTGACAAATAATTCTCTGAATGGACCAATTCAGGGCTGGATACTGAGCTTCAAACATAATATAGATTTATCTTACAACAATTTTACAAAGTCTTCTGCATCAAGCTGTCAGCTCTTGGATGTGAACTTGGCTTCAAGCCATTCTTCTTCAGCAGCAACTTCGCCTTCAACTTTTTGTTTGAAGAGGAACCTTCCTTGTGCAGGAAAACCCCAGTATAAGTCATTGTTCATAAACTGTGGAGGAGATCAGGGGGAGTTTGAAGGCAATAACTATGTAGGTGACCTGCAGCAAGATGGCATTTCAAACTTTGTTAGTAGAAATGAAGGACAATGGGCTTATAGCAGCACAGGAGTATATTTGGGAAATGCTAATGCAGATTATATAGCACAAAAtacattttctttgaatattgaTGGTCCAGAATACTACCAAAATGCTCGTCTTGCCCCTCTGTCACTTAACTACTATGGCCTTTGTATGCCAAAGGGCAATTATAAAGTGAAGCTCCATTTTGCTGAGATAATGTTTTCTGATGACCAGACTTATAGCAGTCTAGGAAGGCGCATATTTGATGTTTCAGTTCAAGGTTTTagatatttgaaagattttaataTTGTGGAAGCAGCTGGTGGAGTTGGAAAGGGCATCACTAAGGAAtttgatgttgatgttgatgATGGCACCTTGGAAATCCACTTATACTGGGCAGGGAAAGGAACTACTGCCATTCCTGATAGAGGTGTATATGGACCTCTTATATCTGCTATTGAGGTCATACCaaACTTTGAAAATCCTTCAAAAGGGCTGTCTGCTGGTGCTATTGTTGGAATTGTTGCTGCATCCTGTGTATTTGTCATATTGGTACTGGTTGTCCTTTGGAAGATGGGTTTCCTTGGTAGGAAAGATACAACAGATAAAGAACTTCTGGAAATGAAAACAGGTTATTTCAGCTTAAGACAAATTAAAGCAGCTACTAATAACTTTGACCCCGCAAATAAGATAGGTGAAGGAGGATTTGGGCCTGTATACAAGGGTGTGCTGTCAGATGGTGATGCGGTTGCTGTTAAGCAGCTCTCCTCCAAATCAAAGCAAGGGAACCGTGAATTTGTCAATGAAATTGGAATGATATCTGCTTTGCAGCATCCAAATCTGGTGAAGCTTTATGGCTGTTGCATTGAAGGAAACCAGTTGCTACTAATATATGAATACATGGAGAACAACAGTCTTGCTCGTGCACTTTTTGGTGAACAAGAACAGAAGCTGCAGTTGGACTGGCCTACAAGAATGAAGATCTGTGTGGGGATAGCAAAGGGATTGGCTTATCTTCACGAGGAATCAAGGTTGAAAATAGTACACAGGGACATTAAGGCAACCAATGTCTTACTTGACAAGGATCTGAATGCCAAGATCTCTGACTTTGGTTTAGCTAAGCTTGATGAAGAAGAGAATACTCACATCAGTACACGGATAGCAGGAACAATTGGTTACATGGCTCCAGAATATGCTATGCGGGGTTACTTGACTGATAAAGCAGATGTATATAGCTTTGGAGTTGTAGCTTTAGAGATTGTTAGTGGAAAAAGCAACACAAAATACAGGCCAAAGGAGGAGTTTGTATATCTTCTAGATTGGGCCTATGTTCTCCAAGAGCAAGGAAACCTTCTGGAATTGGTGGATCCAAGTCTTGGTTCAAAGTACTCCCCAGAGGAGGCCATGAGAATGCTGAGCTTGGCACTCTTATGCACCAACCCATCTCCCACTCTTAGACCAACCATGTCATCTGTAGTGAGCATGCTCGAAGGAAAAACTCCAATTCAAGCGCCGATAATCAAGCGCAGTGAGAGCAACCAAGATGCAAGATTTAAAGCCTTTGAGTTGCTATCACAAGACAGCCAAACTCATGTTTCTTCTGCATACTCACAAGAAAGTGTGGAGAAAAGACACAAATCAGAAGATGGGCCATGGGTTGACTCCTCCATATCTCTTCCAAGTGGAGATGATTATTCTTCAACCAGTAAACTTGTTTAA 3042 0.3974 MWFVMSGSKLVYALILGFVALNWTEVFESNAQLIPQDEVKALQAISDKLGNVNWKVTERSCTEDGGFNGQININNDIVRNVTCSCTFQNNTVCHVDNIFLKGQNISGVFPSEFGNITQLKVLDLTRNYLSGSLPTNFAHNSLVILSLLGNRLSGSIPTGIGDIVSLEELVLECNQLEGPLPPSLGNLSKLRRLLLSANNFTGTIPETFSKLKNLTDFRIDGSSLSGPVPSFIGNWTKLERLDMQGTSMEGPIPPTISQLTLLTELRITDLNGPTMTFPDLKDLKNLERLELRNCLITGPILDYIGQMTNLATLDLSFNMLTGSVPDSIQGLNKLNYLFLTNNSLNGPIQGWILSFKHNIDLSYNNFTKSSASSCQLLDVNLASSHSSSAATSPSTFCLKRNLPCAGKPQYKSLFINCGGDQGEFEGNNYVGDLQQDGISNFVSRNEGQWAYSSTGVYLGNANADYIAQNTFSLNIDGPEYYQNARLAPLSLNYYGLCMPKGNYKVKLHFAEIMFSDDQTYSSLGRRIFDVSVQGFRYLKDFNIVEAAGGVGKGITKEFDVDVDDGTLEIHLYWAGKGTTAIPDRGVYGPLISAIEVIPNFENPSKGLSAGAIVGIVAASCVFVILVLVVLWKMGFLGRKDTTDKELLEMKTGYFSLRQIKAATNNFDPANKIGEGGFGPVYKGVLSDGDAVAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYMENNSLARALFGEQEQKLQLDWPTRMKICVGIAKGLAYLHEESRLKIVHRDIKATNVLLDKDLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTKYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLGSKYSPEEAMRMLSLALLCTNPSPTLRPTMSSVVSMLEGKTPIQAPIIKRSESNQDARFKAFELLSQDSQTHVSSAYSQESVEKRHKSEDGPWVDSSISLPSGDDYSSTSKLV 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1664 1013 Pfam Leucine rich repeat 285 344 IPR001611 GO:0005515
Ssu3g1664 1013 PANTHER - 73 997 - -
Ssu3g1664 1013 Gene3D Phosphorylase Kinase; domain 1 632 741 - -
Ssu3g1664 1013 SUPERFAMILY L domain-like 78 370 - -
Ssu3g1664 1013 ProSitePatterns Serine/Threonine protein kinases active-site signature. 788 800 IPR008271 GO:0004672|GO:0006468
Ssu3g1664 1013 Gene3D Ribonuclease Inhibitor 272 396 IPR032675 -
Ssu3g1664 1013 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 73 997 - -
Ssu3g1664 1013 SUPERFAMILY Protein kinase-like (PK-like) 646 938 IPR011009 -
Ssu3g1664 1013 Gene3D Ribonuclease Inhibitor 168 271 IPR032675 -
Ssu3g1664 1013 Gene3D - 412 600 - -
Ssu3g1664 1013 ProSiteProfiles Protein kinase domain profile. 666 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1664 1013 Pfam Malectin domain 412 594 IPR021720 -
Ssu3g1664 1013 Pfam Protein tyrosine and serine/threonine kinase 670 936 IPR001245 GO:0004672|GO:0006468
Ssu3g1664 1013 SMART serkin_6 666 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1664 1013 CDD STKc_IRAK 672 939 - -
Ssu3g1664 1013 Gene3D Ribonuclease Inhibitor 39 165 IPR032675 -
Ssu3g1664 1013 MobiDBLite consensus disorder prediction 970 1013 - -
Ssu3g1664 1013 Gene3D Transferase(Phosphotransferase) domain 1 742 960 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1664 Ssu-Chr3 48842804 48854297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1664 1 1004 Receptor kinase-like Gene Family AT1G53440 62.303 0.0 1241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu3g1664 PK_Tyr_Ser-Thr 3.2e-51 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1664 3 48842804 48854297 Ssu3g1664 3 48842804 48854297 ECH