Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1652 ATGAAGATTCAGTGCAACGTGTGCGAAGCCGCAGAGGCTAAGGTTCTGTGCTGTGCGGACGAGGCCGCACTGTGCTGGGAATGCGATGAGAAGGTTCATGCGGCTAACAAGCTCGCCAGCAAGCACCAGAGAgtccctctttctctctctgccTCCCACATGCCTAAGTGTGACATATGTCAGGAAATGGTTGGTTATTTCTTCTGTTTAGAGGATCGAGCTTTGCTATGTAGGAATTGTGATGTATCTATACACACAGCAAATGCCTGTGTCTCTGGTCACCAAAGGTTTTTGCTTACTGGTGTGAGAGTGGGCCTTGAAGCTACTGAGCATGGTGCTTCCTCGTCTTCTGTGAAGTCACAGTCTGGGGAGAAAATGTCTGATGCCAAATCTTCGGTGTCTTATGGTGGTGGTTATGCTGCTGGAAATGTCTCACAATGGCCCATTGAAGAATTGCTCGGGTTAAATGAATTCAGTCAGTATTATAATTACATGGATGGATCATCTAAGGCTGACAGTGGTAAACATGGGGATTCTGATTCTTCTGTTTTAAGGTCTAGTGAAGAGGAAATGGATGACGATGGCTTCTTGGGGCGTGTTCCAGATTCATCCTGGACAGTTCCTCAGATCCCTTCCCCTCCTACAGCTTCAGGGTTATATTGGCCGAAAGACCCTCGATATACATCTGACAATACTATGTTTGTTCCTGACATATGCTTTTCTCGCATGCAACAGCCCTACCGTGCTCAGAATAATTCTGTTCTTTTGAAACGGCGTAGGCAACTATAA 789 0.4499 MKIQCNVCEAAEAKVLCCADEAALCWECDEKVHAANKLASKHQRVPLSLSASHMPKCDICQEMVGYFFCLEDRALLCRNCDVSIHTANACVSGHQRFLLTGVRVGLEATEHGASSSSVKSQSGEKMSDAKSSVSYGGGYAAGNVSQWPIEELLGLNEFSQYYNYMDGSSKADSGKHGDSDSSVLRSSEEEMDDDGFLGRVPDSSWTVPQIPSPPTASGLYWPKDPRYTSDNTMFVPDICFSRMQQPYRAQNNSVLLKRRRQL 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1652 262 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 132 - -
Ssu3g1652 262 CDD Bbox1_BBX-like 5 47 - -
Ssu3g1652 262 SMART bboxneu5 4 47 IPR000315 GO:0008270
Ssu3g1652 262 SMART bboxneu5 52 99 IPR000315 GO:0008270
Ssu3g1652 262 MobiDBLite consensus disorder prediction 171 197 - -
Ssu3g1652 262 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 132 - -
Ssu3g1652 262 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Ssu3g1652 262 Gene3D Classic Zinc Finger 1 92 - -
Ssu3g1652 262 PANTHER B-BOX ZINC FINGER PROTEIN 22 131 261 - -
Ssu3g1652 262 PANTHER B-BOX ZINC FINGER PROTEIN 18 131 261 - -
Ssu3g1652 262 MobiDBLite consensus disorder prediction 169 222 - -
Ssu3g1652 262 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Ssu3g1652 262 CDD Bbox1_BBX-like 56 99 - -
Ssu3g1652 262 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1652 Ssu-Chr3 48077698 48080878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1652 1 262 C2C2-CO-like Transcription Factor Family AT1G78600 46.483 2.02e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Ssu3g1652 zf-B_box 1.4e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1652 3 48077698 48080878 Ssu3g1652 3 48077698 48080878 ECH