Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1650 ATGAGAAGGGTCCCCGTAGGGCTGCTGAAACGAGCTTCCCCTTCATTCCTCCTTCAGCATAATGCACGACGCTCCCTCACCACATCCCTCCCTCCCCGAGAAGTGGTGCAACCCTTCTGCGACCTCTCCGACGTCGTCGTTTCCGCCCCTCAACCCTCCCCGTGGCTCCCCCAAATCCTCACCCTCCTCGACGGCTCCCCCTCGATGGAGTCCAACCTCGACTCCTTCTGCCGCCAATTCCTCATCACCCTCTCCCCCTCCTTCGTCTCCCACACCCTCCGCTCCCTCTCCGATCCCCTTACCGCCACGCGCTTCTTCTCCTGGGCCGCCACCCAGCCCCGCTACGCCCACTCCCTCGACTGCCACGTGTCCCtcctccacctcctcctccactCCCCCGACCCCGACCCCTTCAGCCGAGCCTTCGCCGCCCTCCGTCGTGCGCGCCTCCCCATGACCCTCCCGGCGGCCAACTCCCTCGTCAAAACCCTCACCGCCGCCGGCCTCGTCGAGGAGCTCCTCTGGGTCTGGCGCGCCATGAGGGACGCCGACCTCCGACCCACCCTCCTCACCTACAACTCCCTCCTCAACGCGCTGGTCAACGCTGCCCTCGTTGACTCCGCGGAGCGCGTGTTCGCGGCGATGAAGGAAGGCGCGTCGCCCAAGCCTGACATTGTCAGTTACAACACGCTCATCAAAGGGTACTGCAAGGTGGGACGAACGCGGAATGCTCTCGCCGCGGTTAGCCAAATGGAGGTTGAAAACGTGGCCCCTGATGAGGTCACTTATATGACCTTGATACAAGCGCGTTACAACGAGGGTGACGTGGATTGTTGTTTGAGTCTTTACCATGAGATGGAGGATAAGGGGTTGGTGATCCCTCCTCACGCGAGTAGTTTATTGATATGTGGGTTGTGTAAGCAGGGGAAGGTCGTGGAGGGTTGTGCTGTGTTTGAGAACATGGTTAGGAAAGGTTGTAAGGCTCATAAGGCAGCATATACCGCCATAATTGATGGTTATGCCAAGAGTGGGAAGTTGGATGCGGCAATGGCATTTTTTGAGAGGATGAAGGTGGATGGGATTGAGCCGGATGAGGTTACCTATGGAGCTGTTGTTAGCGGGTTGTGTAAGAGTGGGAGAATGGAGGAGGGTATGGGTTATTTTAGGTTTTGTAGGGGTAATGGTGTGGCGGTGAATGCTGTGTTTTATTCGAGTTTGATTGATGGGCTTGGGAAGGCGGGGAGGGTGGATGAGGCGGAGAGGTTGTTTGAGGAGATGGTGGAGGAGGGGTGTCCGCAGGATTCGTATTGTTACAATGCTCTCATGGACGGTTTGTGCAAGAGTGGGAGGATTGATGAGGCGCTGGCGCTGTATAGGCGGATGGAGCGAGAGGGGTGTGAGCAGACTGTTTATACGTTTACTATACTTATCAGTGAGCTTTTCAAGGAGCGTAGGAATGAGGAGGCTCTGAAGCTGTGGGACGAGATGATTGACAAAGGTGTCACGCCGAATGTGGCGTGTTTTAGGGCTCTTTCGATTGGACTGTGTCTTTCGGGCAAGGTTGCAAGGGCCTGCAAGGTGTTAGATGAGCTGGCTCCCATGGGGATTGTTCTGGAAACAGCGTATGAGGACATGATTAGTGTGCTGTGCAAGGCCGGGCGCTTGAAGGAGGCCTGCAAGTTGGCTGATGGAATTGTGGATAGGGGTAGGGAAATTCCGGGAAAAGTTCGTACTGTGCTGATTAATGCCTTGAGGAAGGCTGGTAATGCAGATTTGGCGATAAAGTTGATGCATAGCAAGATTGGCATTGGCTATGACCGAATGCGCAGCGTTAAGAGGCGAGTGAAGTTCCAAACCCTTGTTGAcagttga 1872 0.5518 MRRVPVGLLKRASPSFLLQHNARRSLTTSLPPREVVQPFCDLSDVVVSAPQPSPWLPQILTLLDGSPSMESNLDSFCRQFLITLSPSFVSHTLRSLSDPLTATRFFSWAATQPRYAHSLDCHVSLLHLLLHSPDPDPFSRAFAALRRARLPMTLPAANSLVKTLTAAGLVEELLWVWRAMRDADLRPTLLTYNSLLNALVNAALVDSAERVFAAMKEGASPKPDIVSYNTLIKGYCKVGRTRNALAAVSQMEVENVAPDEVTYMTLIQARYNEGDVDCCLSLYHEMEDKGLVIPPHASSLLICGLCKQGKVVEGCAVFENMVRKGCKAHKAAYTAIIDGYAKSGKLDAAMAFFERMKVDGIEPDEVTYGAVVSGLCKSGRMEEGMGYFRFCRGNGVAVNAVFYSSLIDGLGKAGRVDEAERLFEEMVEEGCPQDSYCYNALMDGLCKSGRIDEALALYRRMEREGCEQTVYTFTILISELFKERRNEEALKLWDEMIDKGVTPNVACFRALSIGLCLSGKVARACKVLDELAPMGIVLETAYEDMISVLCKAGRLKEACKLADGIVDRGREIPGKVRTVLINALRKAGNADLAIKLMHSKIGIGYDRMRSVKRRVKFQTLVDS 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1650 623 Pfam PPR repeat 191 217 IPR002885 -
Ssu3g1650 623 Pfam PPR repeat 300 326 IPR002885 -
Ssu3g1650 623 Pfam PPR repeat 545 566 IPR002885 -
Ssu3g1650 623 Gene3D Tetratricopeptide repeat domain 461 535 IPR011990 GO:0005515
Ssu3g1650 623 Gene3D Tetratricopeptide repeat domain 389 460 IPR011990 GO:0005515
Ssu3g1650 623 Gene3D Tetratricopeptide repeat domain 58 249 IPR011990 GO:0005515
Ssu3g1650 623 Gene3D Tetratricopeptide repeat domain 250 322 IPR011990 GO:0005515
Ssu3g1650 623 Gene3D Tetratricopeptide repeat domain 323 388 IPR011990 GO:0005515
Ssu3g1650 623 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 20 623 - -
Ssu3g1650 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 434 468 IPR002885 -
Ssu3g1650 623 Gene3D Tetratricopeptide repeat domain 538 612 IPR011990 GO:0005515
Ssu3g1650 623 TIGRFAM PPR: pentatricopeptide repeat domain 226 260 IPR002885 -
Ssu3g1650 623 TIGRFAM PPR: pentatricopeptide repeat domain 191 217 IPR002885 -
Ssu3g1650 623 TIGRFAM PPR: pentatricopeptide repeat domain 301 327 IPR002885 -
Ssu3g1650 623 TIGRFAM PPR: pentatricopeptide repeat domain 403 434 IPR002885 -
Ssu3g1650 623 TIGRFAM PPR: pentatricopeptide repeat domain 436 467 IPR002885 -
Ssu3g1650 623 TIGRFAM PPR: pentatricopeptide repeat domain 471 505 IPR002885 -
Ssu3g1650 623 TIGRFAM PPR: pentatricopeptide repeat domain 261 292 IPR002885 -
Ssu3g1650 623 TIGRFAM PPR: pentatricopeptide repeat domain 366 389 IPR002885 -
Ssu3g1650 623 TIGRFAM PPR: pentatricopeptide repeat domain 332 365 IPR002885 -
Ssu3g1650 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 398 IPR002885 -
Ssu3g1650 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
Ssu3g1650 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 259 293 IPR002885 -
Ssu3g1650 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 224 258 IPR002885 -
Ssu3g1650 623 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 20 623 - -
Ssu3g1650 623 Pfam PPR repeat family 434 481 IPR002885 -
Ssu3g1650 623 Pfam PPR repeat family 223 269 IPR002885 -
Ssu3g1650 623 Pfam PPR repeat family 332 377 IPR002885 -
Ssu3g1650 623 Pfam PPR repeat 395 427 IPR002885 -
Ssu3g1650 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 469 503 IPR002885 -
Ssu3g1650 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 399 433 IPR002885 -
Ssu3g1650 623 SUPERFAMILY TPR-like 260 565 IPR011990 GO:0005515
Ssu3g1650 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 328 IPR002885 -
Ssu3g1650 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1650 59 605 Glycosyltransferase AT1G05670 26.389 6.77e-53 191