Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1636 ATGGATTTGATGTTCCCTCTGAAACCCCACAGTGTTATTCTCAAGGCACCACCCTCTTCATCTCTATTGTTCCCTCTTCCTCTCAAGTTTCGCGCCGTCTCCGCTTTCAAGCATGCCAATATTCAATGCGAGCTTGAAGGCAGACCCAATGGAGCTCTCTCTGGCGAATTTGACCCTCGCTCCCTTGACAGGCAAAAAGCACTGGAAGCAGTGATGAATGATATAAACAACTCTTTTGGAAAGGGTAGTGTTACAAGACTGGGCAGTGCTGGTGGAGCTTTGGTTGAAACTTTCCCCAGTGGTTGTTTGACATTGGACTGTGCTTTAGGTGGTGGTCTTCCTAAAGGAAGAATTGTAGAGATATTTGGACCCGAAAGCAGTGGGAAAACCACCCTAGCACTTCATGCTATTGCAGAAGTGCAGAAATTAGGAGGCAATGCAATGCTTGTTGATGCAGAGCATGCTTTTGATCCTGCATATTCTAAAGCATTAGGAGTGGATgtagaaaatttaattgtatGCCAACCTGATCATGGAGAGATGGCTCTTGAGATTGCAGACCGAATGTGTAGATCTGGCGCCATAGATCTTATTTGTGTGGATTCTGTCTCAGCTCTCACTCCACGAGCTGAAATTGAAGGGGAGATTGGAATGCAACAAATGGGATTGCAAGCTCGTCTTATGAGCCAAGCTTTGCGTAAGATGTCTGGAAACGCCTCTAAAGCTGGTTGTACTCttatatttttgaatcaaataaGATATAAGATTGGTGTCTATTATGGAAATCCAGAAGTGACTAGTGGTGGAATTGCATTGAAGTTCTTTGCATCACTTCGGCTAGAAGTTCGTCCTATAGGGAAGATAAAGTCTGCTAAAGGAGATGAAGAAATTGGCCTTAAAGTTCGTGTAAGAGTGCAAAAGAGCAAGGTATCAAGGCCATACAAACTAgctgaatttgaaattatatttggaGAGGGAATCAGTAAGCTGGGATGCATTTTAGATTGTGCAGAAATGATGGATATTGTCTCAAAGAAGGGTTCTTGGTACAGCTATGGAGACCATCGGTTGGGACAGGGAAGGGACAAGGCAATACAGTACTTAAAGGAGAACACACATCTTTTAGAAGAAATTGAAAAGGTAGTTCGGTCTTCATTGGTTGATGGAACTAACCAAACAGGCCTTGCATTCATGAAGAATAGTCCAGTGCTCCATCAAGACGATATATTTGAGGAAAGTCAATGA 1245 0.4185 MDLMFPLKPHSVILKAPPSSSLLFPLPLKFRAVSAFKHANIQCELEGRPNGALSGEFDPRSLDRQKALEAVMNDINNSFGKGSVTRLGSAGGALVETFPSGCLTLDCALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDHGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASLRLEVRPIGKIKSAKGDEEIGLKVRVRVQKSKVSRPYKLAEFEIIFGEGISKLGCILDCAEMMDIVSKKGSWYSYGDHRLGQGRDKAIQYLKENTHLLEEIEKVVRSSLVDGTNQTGLAFMKNSPVLHQDDIFEESQ 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1636 414 Hamap Protein RecA [recA]. 64 389 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ssu3g1636 414 CDD recA 63 386 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ssu3g1636 414 Gene3D - 93 392 IPR027417 -
Ssu3g1636 414 ProSitePatterns recA signature. 271 279 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Ssu3g1636 414 ProSiteProfiles RecA family profile 1. 94 252 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Ssu3g1636 414 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 327 IPR027417 -
Ssu3g1636 414 SMART AAA_5 115 286 IPR003593 -
Ssu3g1636 414 PRINTS RecA protein signature 357 374 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ssu3g1636 414 PRINTS RecA protein signature 185 214 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ssu3g1636 414 PRINTS RecA protein signature 223 252 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ssu3g1636 414 PRINTS RecA protein signature 151 180 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ssu3g1636 414 PRINTS RecA protein signature 268 296 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ssu3g1636 414 PRINTS RecA protein signature 303 332 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ssu3g1636 414 PANTHER RECA 61 396 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ssu3g1636 414 Pfam recA bacterial DNA recombination protein 66 328 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ssu3g1636 414 SUPERFAMILY RecA protein, C-terminal domain 328 384 IPR023400 -
Ssu3g1636 414 ProSiteProfiles RecA family profile 2. 257 332 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Ssu3g1636 414 TIGRFAM tigrfam_recA: protein RecA 63 383 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ssu3g1636 414 PANTHER MITOCHONDRIAL DNA REPAIR PROTEIN RECA HOMOLOG 61 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1636 Ssu-Chr3 46625590 46636772 Transposed