Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1621 ATGGGCACTGATGCAGTGGGAAGCGATGGGTACTCTCTGCTGAAGGATTTCAGATTGGAAATTGAAGTAAAGGAGGGAACTTTCTCTCTCTGCTTTTGGGGTTATTTGACGAGTTCCACTACATTCCCTGTTACCATTATCCAACAGGTTTACTCTGATATCTCTGAAAGTGCTCCTTTTCTtgttattaatgataataagagAATCAACATGTTACCAGTTCTTCTCTTACATGAAGAAGCTCCCGATACTGGCAATATAAATTCCTGGGCAGAAGTTCCACGTGCAACTGTTGATTTTGAGTTTCCTTTGGAAAAATGGGTTCATGTTGGATGTGAGGTTTGTCCAGATCATATCCAGCTTCAGATTAACGGAGATATTGTAGGTGAAAAGTCTCTGTGTTCCTTATTAAATAAGGAATCCGGTTCAAGGGATTTGAAGAAATTAACTTTGGCAAATGTTGGCGGAGATGGAAATAGTGTGCAGGGTTATGTgcacaattttgaaatatttcctATTGTTTCTTCTATTAAGGATCGCCATTTAAAGGACCCTCCTCTGAAGTTATCAATTGATGAATCATCTGCCTCTGAGATTGAAGAAGAAAGTGATGGTGTTTGGGGCATTGTTGGTGGCAAGGCATCTTGTCGTAGGAACTTCTCTTTGGACGTTGTTCTATCAGATGCCTTTGGACAGCCTGTAAATGAGGAGAATGAGGTTTTTGCTTCACTTTTGTATGCTGACACGGGGACACCAGTGGAGAATACAACTGATAATGAAGCACCCCTTTTAGCTAGTTATGATGGAATAGAATTTTCTTCTTGTGAAAGACCAAGTAAGCTTTTGCTGGGACGTGCTTCATTTAAGCTGAAAATATCTCAGCTTTCATCCAAGTGTGATAACAGGTTGTTCCTCATCAGATTTTGTGTTCCAAAACTAGGAAATTATCCTTTTCTTGAGACATACTCCCATCCAATTCGATGCATCTCCAGGAGCCGTAACACAAGATTGTCCACTCTGGTGTGGAAAAGGTCAACTTCTGCGCTTAATTGTCTTAGTTTATCTCAATCTTCAGCTATGGATGATGGGTCCTCGGAACTTCAGCATTCTGGTCATGAAGCACAAGCCAATCCACTGATGAAGCGGTTTAGACTTGGAcaagacaagatatctgtatcAGTGAAGGCTAACCCCACCTTAGAGCAACCTGATGAAGAATGTAATTCTCATGTCCGGACTGCTAATCAGGTTGAGAATGGGTTTTCAACAAGCTTGGATGAAAGGCCTGCAAACATCAATGAAGCAGATGACTCTCCATCTGATTCAGAGAGTATAGGGGAGGGAAATTCTCCTTTAAATAGTATGGGAAGTAGAAGATATCCAATATCTGATATGATCATTTTCAAATACTGCCTGGCAAGCTTGGCTGAGAGATCTCTCATGCTTAAGGAAATTGCTACCTCTGCTTCTGACAAAGAAATTTCTGAATTGGCTCATCATGTGTCACTCTATTCAGGATGTGCACATCATGGAAACCAAATATTAATGGCCAAGAGATTGATAGAAGATGGAACTAATCTTTGGAAGGTGATGTCTCCAAACAATCACCACATTCCTTGGGACAGTGCAGTGTATGAGATTGAAGAGCAATTCATGAAGATTGCTTCTTGTGGTTCAAGATCTCTCTCACCTCAGGACCTAGATCTTTTGAGAAGGATTTCTGGATGTCAAGAGTACCTAACACAAGAGAACTTTGAGAAGTTGTGGTGTTGGTTGTACCCTGTGGCTTTTATAATATCAAGGGACTGGATAAATCCTATCTGGAATTCAACATATCCTAAGTGGATAGAAGGATTCATAACTAAGGAGGAAGCAGAGGCTTCACTTCAAGGTCCCACAGGATTTCAAGAACCAGGTACCTTTATCCTCCGATTCCCTACCTCAAGAAGCTGGCCACACCCAGATGCTGGTAGCCTAGTTGTGACTTATGTCGGCAATGACTACAAACTCCATCACAGGTTACTTTTTATGGATCATGTTTATGGTTCTTATAGCTCTGGTGATAAAAGAGTTGACGTGAAACCGCTGCAAGATATGCTATTGGCAGAACCTGAGCTGTCTCGATTGGGAAGGATAATACGAAGCCATTATTAA 2154 0.403 MGTDAVGSDGYSLLKDFRLEIEVKEGTFSLCFWGYLTSSTTFPVTIIQQVYSDISESAPFLVINDNKRINMLPVLLLHEEAPDTGNINSWAEVPRATVDFEFPLEKWVHVGCEVCPDHIQLQINGDIVGEKSLCSLLNKESGSRDLKKLTLANVGGDGNSVQGYVHNFEIFPIVSSIKDRHLKDPPLKLSIDESSASEIEEESDGVWGIVGGKASCRRNFSLDVVLSDAFGQPVNEENEVFASLLYADTGTPVENTTDNEAPLLASYDGIEFSSCERPSKLLLGRASFKLKISQLSSKCDNRLFLIRFCVPKLGNYPFLETYSHPIRCISRSRNTRLSTLVWKRSTSALNCLSLSQSSAMDDGSSELQHSGHEAQANPLMKRFRLGQDKISVSVKANPTLEQPDEECNSHVRTANQVENGFSTSLDERPANINEADDSPSDSESIGEGNSPLNSMGSRRYPISDMIIFKYCLASLAERSLMLKEIATSASDKEISELAHHVSLYSGCAHHGNQILMAKRLIEDGTNLWKVMSPNNHHIPWDSAVYEIEEQFMKIASCGSRSLSPQDLDLLRRISGCQEYLTQENFEKLWCWLYPVAFIISRDWINPIWNSTYPKWIEGFITKEEAEASLQGPTGFQEPGTFILRFPTSRSWPHPDAGSLVVTYVGNDYKLHHRLLFMDHVYGSYSSGDKRVDVKPLQDMLLAEPELSRLGRIIRSHY 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1621 717 Gene3D SH2 domain 601 710 IPR036860 -
Ssu3g1621 717 MobiDBLite consensus disorder prediction 419 454 - -
Ssu3g1621 717 PANTHER SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 8 713 IPR001217 GO:0003700|GO:0006355|GO:0007165
Ssu3g1621 717 PANTHER SIGNAL TRANSDUCER AND TRANSCRIPTION ACTIVATOR 8 713 - -
Ssu3g1621 717 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 174 IPR013320 -
Ssu3g1621 717 SUPERFAMILY SH2 domain 608 686 IPR036860 -
Ssu3g1621 717 ProSiteProfiles Src homology 2 (SH2) domain profile. 615 700 IPR000980 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF STAT Ssu3g1621 None None None