Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0320 ATGGGAAGGGGTAGGGTTCAGCTGAAGCGGATCGAGAACAAAACAAGCCAGCAAGTGACGTTTTCGAAGCGGAGAACGGGACTTCTCAAGAAAGCGCACGAAATCTCTGTGCTATGTGATGCTCAAGTGGCTTTGATTATGTTCTCTACCAAAGGCAAACTTTTTGAGTATTCCTCTGAACGCAGCGTGGAAGACGTTCTGGAACGTTACGAGAGATATACTCATACAGCACTTGCTGGAGCTAACAATGAATCACAGGGGAATTGGTCTTTCGAATATGTCAAGCTCACCGCTAAGGTTGAAGTCTTGGATAGGAACGTAAGGAATTTCTTGGGTAATGATCTGGATCCCTTGAGTATGAAAGAGCTTCAGAGTTTGGAGCAGCAGCTTGACACATCTCTGAAGCGCATCCGAACAAGAAAGAACCAAGTTATGAATCAATCCATCTCAGAGATGCATAAAAGGGCAAGGGCATTACAAGAGCAAAACAGCAAGCTAGCAAAGATGAAGGAGAAAGTGAAGACACTGACTCAACATCCACAGAGCGGCCCAGAAATCCTAGGCCAAAATTCATCCACCCTCAACTTATCTTCTCTACAGCTACTACCACCACAAAGACTGGTTACTTCTCCAACTCTCAATGGCACATTACAAGGAAGAGCATCGCCGGAAGAAACGGGTGAAGCTCAAACAGCCCATAATAGCAATTCTCTCCTCCCACCATGGATGCTGCATATCTGA 741 0.4561 MGRGRVQLKRIENKTSQQVTFSKRRTGLLKKAHEISVLCDAQVALIMFSTKGKLFEYSSERSVEDVLERYERYTHTALAGANNESQGNWSFEYVKLTAKVEVLDRNVRNFLGNDLDPLSMKELQSLEQQLDTSLKRIRTRKNQVMNQSISEMHKRARALQEQNSKLAKMKEKVKTLTQHPQSGPEILGQNSSTLNLSSLQLLPPQRLVTSPTLNGTLQGRASPEETGEAQTAHNSNSLLPPWMLHI 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0320 246 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Ssu3g0320 246 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Ssu3g0320 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ssu3g0320 246 ProSiteProfiles K-box domain profile. 86 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu3g0320 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ssu3g0320 246 Pfam K-box region 84 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu3g0320 246 MobiDBLite consensus disorder prediction 209 246 - -
Ssu3g0320 246 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Ssu3g0320 246 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN FUL-L 1 205 - -
Ssu3g0320 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu3g0320 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu3g0320 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu3g0320 246 Coils Coil 123 179 - -
Ssu3g0320 246 MobiDBLite consensus disorder prediction 209 238 - -
Ssu3g0320 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ssu3g0320 246 PANTHER MADS BOX PROTEIN 1 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0320 Ssu-Chr3 5872175 5882279 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu3g0320 K-box 1.7e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0320 3 5872175 5882279 Ssu6g1170 6 19059123 19070036 ECH
Ssu3g0320 3 5872175 5882279 Ssu3g0320 3 5872175 5882279 ECH
Ssu3g0320 3 5872175 5882279 Ssu8g2182 8 57466305 57543524 ECH
Ssu2g1443 2 59872705 59876488 Ssu3g0320 3 5872175 5882279 ECH
Ssu8g2182 8 57466305 57543524 Ssu3g0320 3 5872175 5882279 PCT
Ssu3g0320 3 5872175 5882279 Ssu8g2181 8 57438634 57450118 PCT