LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu3g0244	ATGTCTGAAATGGTTTCTGCTCTTGCTCAAGTTATGGGAACTACCAATCGGAACCCACACATGCCACAATCAACCTCCTTTCCTGTCTCAACTTCATGTCCATCTCAACCTCTAGATCAAGAGGTGAAAAAGAAACCACACTACAGAGGAGTCAGGCAGAGACCTTGGGGGAAATGGGCAGCAGAAATACGTGACCCAAGAAAAGCAGCCAGGGTGTGGCTAGGAACCTTTGAAACAGCTGAGGATGCAGCCATAGCATATGACAAAGCGGCACTCAAGTTCAAAGGCACAAAAGCTAAGCTCAATTTCCCTGAAAGAGTTCATCAAGATGTTGCCTATCTGCAACAACAAGGTTCATCAACAAACGTTTTGCCCCTCCATGCAACTTCTACCACTGCCTCTAGTGCTGCTGGGTCTGTTTCTTCTGTTGATGTTGTTGCTCCTCCCACAATGTCCCCACACGATCAACATGACCACCAAGTTTTCCCAAATCTGTTTCAGTATGCACAGATTCTTTCAAGTGATGATGCAGAGCTCCCTTATTACACATCCCATCTtttcaatcaacaacaacagcCACAACCTTTCAGTTCTCAATTCTCTACCACTATGTCTTCCTCCTCACCTCCCTCATCCAACTTCTACAACCAGCAACAACAATATGATGAACAAGGACATGATCACTCAGGCCAGTAG	696	0.4454	MSEMVSALAQVMGTTNRNPHMPQSTSFPVSTSCPSQPLDQEVKKKPHYRGVRQRPWGKWAAEIRDPRKAARVWLGTFETAEDAAIAYDKAALKFKGTKAKLNFPERVHQDVAYLQQQGSSTNVLPLHATSTTASSAAGSVSSVDVVAPPTMSPHDQHDHQVFPNLFQYAQILSSDDAELPYYTSHLFNQQQQPQPFSSQFSTTMSSSSPPSSNFYNQQQQYDEQGHDHSGQ	231

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu3g0244	231	MobiDBLite	consensus disorder prediction	192	231	-	-
	Ssu3g0244	231	MobiDBLite	consensus disorder prediction	15	38	-	-
	Ssu3g0244	231	ProSiteProfiles	AP2/ERF domain profile.	47	104	IPR001471	GO:0003700\|GO:0006355
	Ssu3g0244	231	PANTHER	DNA-BINDING DOMAIN	41	220	IPR044808	GO:0003700\|GO:0009873
	Ssu3g0244	231	PANTHER	-	41	220	-	-
	Ssu3g0244	231	SUPERFAMILY	DNA-binding domain	47	105	IPR016177	GO:0003677
	Ssu3g0244	231	Pfam	AP2 domain	46	96	IPR001471	GO:0003700\|GO:0006355
	Ssu3g0244	231	PRINTS	Ethylene responsive element binding protein signature	48	59	IPR001471	GO:0003700\|GO:0006355
	Ssu3g0244	231	PRINTS	Ethylene responsive element binding protein signature	70	86	IPR001471	GO:0003700\|GO:0006355
	Ssu3g0244	231	MobiDBLite	consensus disorder prediction	15	50	-	-
	Ssu3g0244	231	Gene3D	AP2/ERF domain	47	106	IPR036955	GO:0003700\|GO:0006355
	Ssu3g0244	231	CDD	AP2	46	105	IPR001471	GO:0003700\|GO:0006355
	Ssu3g0244	231	SMART	rav1_2	47	110	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu3g0244	Ssu-Chr3	4364514	4368053	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu3g0244	4	187	AP2-EREBP Transcription Factor Family	AT5G13330	49.730	5.23e-45	148

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Ssu3g0244		AP2	1.5e-14	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu3g0244	3	4364514	4368053	Ssu5g3364	5	83598133	83599848	ECH
	Ssu3g0244	3	4364514	4368053	Ssu3g0244	3	4364514	4368053	ECH
	Ssu3g0244	3	4364514	4368053	Ssu1g2444	1	68043719	68045809	ECH
	Ssu3g0244	3	4364514	4368053	Ssu5g2957	5	76334643	76341366	ECH
	Ssu3g0244	3	4364514	4368053	Ssu4g1841	4	33588940	33598925	ECH
	Ssu2g1259	2	54581682	54582263	Ssu3g0244	3	4364514	4368053	ECH