Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0153 ATGGTCTTCCCGTCCCTTCCAATCTATCTAGATCCACCCAACTGGTCACAACAGCAACCTAATCAGCCAGCAGGAATTGGCACCCAGATTCCACCACCTTCCCAGCCGCCACCTTCAACGGTGGCGGCCGGGATTGTAGGCGGTGGCTATCAAGGCTCTATCAGACCAGGATCAATGGCTGATAGAGCCAGGATGACGAAGATACACCAACCCGATGCAGCACAAAAGTGTCCACGATGTGAATCTACAAACACCAAGTTTTGCTACTACAACAACTACAGCCTTTCACAGCCTCGCCACTTTTGCAAGACTTGCCGTCGTTACTGGACCAGAGGGGGTGCACTCAGAAACGTGCCAGTTGGAGGTGGCTGCAGAaggaacaaaagaaacaaaggaagCAGCGTTAGATCAAAATCTCCTATGAAACCTGCCACCGGTCCCACCTCAGCAAGTGCTAATTCTTCTTCCAGTGGCTGCACTAATGATCATGTGATGATGGCTCATTTGCCAACTCCAACACCAACTCAATTTCCATTCTTGGCCTCTTTGCATCATTTCAATAGTGACTTCGTTTCTGGGGGCATTGGTTCTCATTTTGGGACAATCCAAACACCTTTGGTGGCTAGAAATGGCAACACTAGTGCTGCCAGTGAAGTTGAGTTTCAAATTGGCACTAGTTCAGCTTCATCACTTGGCAACAGCGGTGGGGCTATGTTGTCATCAAATGGCCTTGGTGAGCAATGGAGGTTTCAACAGCAGTTCCCTTTCTTGAGTACTAATTTAGAGCCACAAATTGGGGGGGTGTTTCAGTTTGGTGGAGAAAATAATAATGCTGAACCGCCAAGTTATGCAAAGGATGGAGGCCGGTTTAATATTCGTTCTAAAATGGATTCTATTGCTAGTGTAAGTGGAATAATGCCTCAGCTTAACACAATAAAACTGGAAGAAAATCATGGTTTGAGTTTGCCAAAAAATCTCTTGATGACTAGTTCGGGAAATGATGTACTTTGGAATAATGGAAGTGGCAATGCATGGAGTGAAGTTCCCAGTTTCACTCCATCACCGAACCACTTCTTGTGA 1080 0.4565 MVFPSLPIYLDPPNWSQQQPNQPAGIGTQIPPPSQPPPSTVAAGIVGGGYQGSIRPGSMADRARMTKIHQPDAAQKCPRCESTNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRNKGSSVRSKSPMKPATGPTSASANSSSSGCTNDHVMMAHLPTPTPTQFPFLASLHHFNSDFVSGGIGSHFGTIQTPLVARNGNTSAASEVEFQIGTSSASSLGNSGGAMLSSNGLGEQWRFQQQFPFLSTNLEPQIGGVFQFGGENNNAEPPSYAKDGGRFNIRSKMDSIASVSGIMPQLNTIKLEENHGLSLPKNLLMTSSGNDVLWNNGSGNAWSEVPSFTPSPNHFL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0153 359 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 10 354 IPR045174 GO:0003700|GO:0006355
Ssu3g0153 359 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 10 354 - -
Ssu3g0153 359 ProSiteProfiles Zinc finger Dof-type profile. 75 129 IPR003851 GO:0003677|GO:0006355
Ssu3g0153 359 MobiDBLite consensus disorder prediction 136 158 - -
Ssu3g0153 359 MobiDBLite consensus disorder prediction 12 39 - -
Ssu3g0153 359 ProSitePatterns Zinc finger Dof-type signature. 77 113 IPR003851 GO:0003677|GO:0006355
Ssu3g0153 359 MobiDBLite consensus disorder prediction 119 158 - -
Ssu3g0153 359 Pfam Dof domain, zinc finger 73 129 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0153 Ssu-Chr3 2821161 2822518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0153 1 131 C2C2-Dof Transcription Factor Family AT2G37590 59.310 4.18e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu3g0153 zf-Dof 3.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0153 - - gmx:102662809 553.518