Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0100 ATGGCTTCTTGGTGGGATTTAAGACCCTTCTTTCGTTTCCGGTCTTTTAGGACACGCTTTCAGGATTTATCAGGCAAGAGGCTGGGGATCTCTGCTGTGACTGGTGCTCACTTTTCATCCATTAATTTTCCATTGATAGACACAAAGAATGAAGAGGAATTCAGCACAAGGGAAGTCCAACTTGGTTCACATACTGTGAGATCTCATGGATATGCAGTTGTGAGAACACATAAACATGATTGGCTCATTCTCTTGCTCCTCGTGTTGATTACTATCAGCCTGAACATTGTCCATCCTTTCCATCGTTTTGTTGGGAAGGATATGATGACTGATCTCAAATATCCCCTGAAGAGTAATACGGTTCCTGTTTGGGCTATTCCTATTTATGCAGTTTTATTGCCTATATTGATCGTTCTTGTCATCTATATCCGAAGGAGAGATGTCTATGATCTTCATCATGCTGTGCTGgGTCTATTGTTCTCCATTTTAGTAACAGCAGTAATTACTGAGGCAATAAAAAATGCAGTAGGTCGACCTCGACCGGACTTCTTCTGGCGATGTTTTCCAGATGGAAAGGATGTTTATGATAAATGGGGAGATGTCGTTTGTCATGGTGACAAAAAGGTCATAAAAGAAGGATACAAGAGTTTCCCCAGCGGCCATACTTCATGGTCATTTGCTGCTCTGGGGTTTCTATCATTGTACTTATCTGGAAAGATAAAAGTATTTGATCGCAGAGGTCATGTTGCAAAACTTTGCATTGTTTTTCTACCACTACTTTTTGCATCACTTGTTGGGATTTCTCGAGTTGATGACTACTGGCACCACTGGCAGGACGTGTTTGCTGGAGGTCTTTTAGGACTTACAGTGGCTACGTTTTGCTATTTGCAGTTTTTTCCTCCTCCTTATCATTCTGAAGGCTGGGGTCCTTATGCATATTTTAGGATGTTGGAAGAATCACGAGGTATGACCCAAGTTCCTAATGTTCAAAATTCTGGTCAAGCGCAGTTAACAGAGGCTCAGGTTGAGAGCCAGGAGGGACAAGATTGCCATGGGTGTATGGGGTTATCTTTATCACGGGATCATTATGCAACATTGGATGACATTGAATCTGGGAGGAGATAA 1125 0.4204 MASWWDLRPFFRFRSFRTRFQDLSGKRLGISAVTGAHFSSINFPLIDTKNEEEFSTREVQLGSHTVRSHGYAVVRTHKHDWLILLLLVLITISLNIVHPFHRFVGKDMMTDLKYPLKSNTVPVWAIPIYAVLLPILIVLVIYIRRRDVYDLHHAVLGLLFSILVTAVITEAIKNAVGRPRPDFFWRCFPDGKDVYDKWGDVVCHGDKKVIKEGYKSFPSGHTSWSFAALGFLSLYLSGKIKVFDRRGHVAKLCIVFLPLLFASLVGISRVDDYWHHWQDVFAGGLLGLTVATFCYLQFFPPPYHSEGWGPYAYFRMLEESRGMTQVPNVQNSGQAQLTEAQVESQEGQDCHGCMGLSLSRDHYATLDDIESGRR 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0100 374 SMART acid_phosph_2 153 295 IPR000326 -
Ssu3g0100 374 Gene3D Phosphatidic acid phosphatase type 2/haloperoxidase 73 306 - -
Ssu3g0100 374 SUPERFAMILY Acid phosphatase/Vanadium-dependent haloperoxidase 75 304 IPR036938 -
Ssu3g0100 374 PANTHER LIPID PHOSPHATE PHOSPHATASE 49 373 IPR043216 GO:0006644
Ssu3g0100 374 CDD PAP2_containing_1_like 110 298 - -
Ssu3g0100 374 Pfam PAP2 superfamily 155 299 IPR000326 -
Ssu3g0100 374 PANTHER LIPID PHOSPHATE PHOSPHATASE 1 49 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0100 Ssu-Chr3 1889651 1893676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0100 57 373 Lipid Metabolism Gene Families AT3G02600 70.440 8.48e-167 467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0100 3 1889651 1893676 Ssu3g0100 3 1889651 1893676 ECH
Ssu7g0376 7 6712165 6738280 Ssu3g0100 3 1889651 1893676 ECH