Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2580 ATGGGGAAGAAGCAGCACAGCAAAGACAGGATGTTCATCACCAAAACGGAGTGGGCAACCGAATGGGGAGGCGCTAAATCCAAAGACAGTCGCACTCCTTTCAAACGTCTTCCCTTCTATTGCTGCGCgctTACATTTACGCCGTTTGAAGAACCGGTCTGCACTGCAGATGGCAGTGTTTTTGATGTCATGAATATAACTccctatattataaaatatggtAAACATCCAGTCACTGGAGCTCCTCTGAAGCTGCAGGATCTCATTCCACTCACTTTCCACAAGAATTCAGAagGAGAATATCATTGTCCAGTGCTAAACAAAGTTTTCACTGAATTTACACATATTGTGGCAGTGAAGACCACAGGAAATGTGTTCTGCTATGAGGCCGTTAAAGAATTAAACATTAAGACAAAAAACTGGAAGGAGCTCCTCACCGATGAGCCATTCACTAAGGATGACCTTATAACCCTTCAGAATCCAAATGCGCTTGACAGCAAGGTTCTTCTGGATTTTGATCAtgttaaaaatagtttgaaagTAGATGATGAAGAACTACAAAAAATGAGTTCAGATCCAACCTATAACATAAACATGTCGGGTGATATCAAGCAAATGCTTCAGGAGCTTGGAActgagaaaggaaaggaaactGCAATGCATGGGGGAGGTGGTGGCAAGGCACAAAAAGAAAGGGCTGCTGCACTTGCTGCCATCTTAGCTGCAAGGTCACGTGTTGAAGAAGATTCCAAATCAAATCCAAACAAAGAGGCCAAAGCTCCTCATGCATTTAGTATTGTAGATGCTGCATCTGCTTCAGTACATGGAAGAAGTGCAGCTGCTGCTAAAGCCTCATCAGATGATAAAACTGCGGCCAGAATAGCTATGCATATGGCTGGTGACAGGGCTCCAGTGAATGCAAAGATGGTAAAAAGCCGTTTCACAACTGGTGCTGCTTCCCGGTCTTTCACTTCAACATCATTTGATCCAGttacaaaaaatgaatttgaatatgtaaaagTTGAGAAGAATCCAAAAAAGAAGGGATATGTACAACTGCATACAACACATGGTGATTTGAACATTGAGTTGCATTGTGATATAACACCCAGGACATGTGAGAACTTCATCACTCTTTGTGAACGTAGATATTATAATGGAGTTGCTTTTCATAGAAACATTAGAAATTTTATGATACAGGGCGGTGATCCTACTGGTACTGGTCGAGGTGGTGAATCTATATGGGGAAAGCCTTTTAAAGATGAACTTAACTCCAAATTAGTTCACTCTGGAAGGGGTGTGGTAAGCATGGCAAACAGTGGGCCGCACACTAATGGTTCCCAGTTCTTCATCTTGTACAAGTCTGCAAATCATCTAAACTTCAAACATACAGTTTTTGGAGGAGTTGTCGGTGGCTTGACTACACTAGCAGCGATGGAAAAGGTTCCTGTTGATGATAATGACCGACCTCTGGAGGAAATCAAGATAACAAGTGTCACGGTTTTTGTCAATCCTTACACAGAACCAGACGAGGGAGAAGAGCAGGATAATGCCAAAGAGAAGAATGCAGAGGATGAAGATAATGGTAAGGTAGGCTCATGGTATAGCAATCCTGGCGCTGGAACGTCTGAATCTGGAGGTACGGGGGTTGGTGGTGGTGTCGGCAAGTACTTGAAAGCTAGGAATGCTCAAGCTACATCTGCTACTGTTGACACCGGTACAGCCgttgtaaagaaaagaaaagtgggaGTTGTCAGCAGtgaatttaaagatttttctgCATGGGAATTTGTTTTATTCCACTTCCTGCTCAGAAATCAGTTGTCCGGCGTGAATGCTAAGTTCAGCCGAGGGTGTCATTCCCAAGGGCACTTCAAGTCAGTAAGCCTAGCTAGTAGCTAG 1902 0.4101 MGKKQHSKDRMFITKTEWATEWGGAKSKDSRTPFKRLPFYCCALTFTPFEEPVCTADGSVFDVMNITPYIIKYGKHPVTGAPLKLQDLIPLTFHKNSEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCYEAVKELNIKTKNWKELLTDEPFTKDDLITLQNPNALDSKVLLDFDHVKNSLKVDDEELQKMSSDPTYNINMSGDIKQMLQELGTEKGKETAMHGGGGGKAQKERAAALAAILAARSRVEEDSKSNPNKEAKAPHAFSIVDAASASVHGRSAAAAKASSDDKTAARIAMHMAGDRAPVNAKMVKSRFTTGAASRSFTSTSFDPVTKNEFEYVKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRTCENFITLCERRYYNGVAFHRNIRNFMIQGGDPTGTGRGGESIWGKPFKDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTTLAAMEKVPVDDNDRPLEEIKITSVTVFVNPYTEPDEGEEQDNAKEKNAEDEDNGKVGSWYSNPGAGTSESGGTGVGGGVGKYLKARNAQATSATVDTGTAVVKKRKVGVVSSEFKDFSAWEFVLFHFLLRNQLSGVNAKFSRGCHSQGHFKSVSLASS 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2580 633 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 385 402 IPR020892 GO:0003755|GO:0006457
Ssu2g2580 633 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 354 501 IPR002130 GO:0000413|GO:0003755
Ssu2g2580 633 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 461 476 IPR002130 GO:0000413|GO:0003755
Ssu2g2580 633 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 390 402 IPR002130 GO:0000413|GO:0003755
Ssu2g2580 633 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 433 448 IPR002130 GO:0000413|GO:0003755
Ssu2g2580 633 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 448 460 IPR002130 GO:0000413|GO:0003755
Ssu2g2580 633 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 364 379 IPR002130 GO:0000413|GO:0003755
Ssu2g2580 633 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 96 IPR013083 -
Ssu2g2580 633 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
Ssu2g2580 633 CDD cyclophilin_RING 350 508 - -
Ssu2g2580 633 SUPERFAMILY Cyclophilin-like 350 508 IPR029000 -
Ssu2g2580 633 MobiDBLite consensus disorder prediction 505 548 - -
Ssu2g2580 633 SUPERFAMILY RING/U-box 37 104 - -
Ssu2g2580 633 MobiDBLite consensus disorder prediction 512 528 - -
Ssu2g2580 633 SMART Ubox_2 39 101 IPR003613 GO:0004842|GO:0016567
Ssu2g2580 633 Gene3D - 329 514 IPR029000 -
Ssu2g2580 633 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 350 501 IPR002130 GO:0000413|GO:0003755
Ssu2g2580 633 PANTHER RING-TYPE E3 UBIQUITIN-PROTEIN LIGASE PPIL2 2 593 - -
Ssu2g2580 633 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842|GO:0016567
Ssu2g2580 633 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 593 IPR044666 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2580 Ssu-Chr2 85120079 85127317 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2580 1 595 U-box Gene Family AT5G67530 75.581 0.0 912
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2580 K10598 - gmx:100819923 1080.47