Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2528 ATGATGCCCGAGCCACACTCTCCTTCCTTCCTCCTCTGTCAAGAGCACTGCACATTCCAAGAAGATTGTGAAACCTACGAAGATGCTCACGCAACTGTCATCGACACCCCCCCATCTTTACCTTCGATTTTCCTCGACAACCACTTGTTCTGCGAGCACGACCACCTTCTCTCTCTACTCTCCAAAGAGAGAGCCACGCGTTTCACTCTCGCTCCTCGCCACGACGTCGTACGTTGGATATCTAGAGTTTCCGAGTTGCACGGTTTCACCGCTCTGACCACTGTTCTTGCGGTGAACTACTTCGACAGGTTCGTGGCGAGCCTAAGGTTTCAGAGGGAAAAGCCGTGGATGACTCAGCTGGCCGCGGTTGCCTGCGTGTCTCTCGCGGCCAAGGTGGAGGAGACACGAGTGCCACTTCTTTTGGACTTGCAAGTGGAGGAATCGAAGTTCGTGTTTGAAGCAAAGACCATAAAGAGAATGGAGCTCCTAGTGTTGTCCACTCTCCAGTGGAAGATGAACCCTGTCACCCCAATTTCTTTCTTTCGACACATTCTCACCGGGCTTCGTTTAAAGCATTGCGAGTTCCTCTGTAGGTGCGAGcgtcttcttctctctctcattgCAGatTCAAGGGTTATGAGTTATCTTCCTTCTACATTGGCTGCTGCTATAATGATCCACGTTATTAAGGAGATTGAACCATTTAATGCAACGGAGTACCGAAATCAGCTTCTTGGTTTTCTCAAAAGTAGTGAGGAACAAGTGAATGGGTGCTACAAACTGATGCTGAGACTATTGGTTTGCTGTGAAGGCATTCACAATCTTGGTCAGAGGCGCAAACGTTTATCTGAACCAATTAGTCCAGCTGGGGTCATTGATGCATCTTTCAGTTGTGAGACCTCAAATGATTCATGGACAGTGGCATCACTTTCAGTGGAGCCAGTGTTTAAGAGGAGAAAAGCTCAGGAGCAGCAGATGCGATTGCATTCAGTAAATCGAGTGGCTATTGAGTATTGA 1017 0.4739 MMPEPHSPSFLLCQEHCTFQEDCETYEDAHATVIDTPPSLPSIFLDNHLFCEHDHLLSLLSKERATRFTLAPRHDVVRWISRVSELHGFTALTTVLAVNYFDRFVASLRFQREKPWMTQLAAVACVSLAAKVEETRVPLLLDLQVEESKFVFEAKTIKRMELLVLSTLQWKMNPVTPISFFRHILTGLRLKHCEFLCRCERLLLSLIADSRVMSYLPSTLAAAIMIHVIKEIEPFNATEYRNQLLGFLKSSEEQVNGCYKLMLRLLVCCEGIHNLGQRRKRLSEPISPAGVIDASFSCETSNDSWTVASLSVEPVFKRRKAQEQQMRLHSVNRVAIEY 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2528 338 Gene3D - 65 173 - -
Ssu2g2528 338 Gene3D - 174 260 - -
Ssu2g2528 338 SMART cyclin_7 179 264 IPR013763 -
Ssu2g2528 338 SMART cyclin_7 78 166 IPR013763 -
Ssu2g2528 338 SUPERFAMILY Cyclin-like 48 173 IPR036915 -
Ssu2g2528 338 SMART Cyclin_C_2 175 289 IPR004367 -
Ssu2g2528 338 PANTHER CYCLINS 35 325 IPR039361 -
Ssu2g2528 338 CDD CYCLIN 73 165 IPR013763 -
Ssu2g2528 338 Pfam Cyclin, C-terminal domain 175 266 IPR004367 -
Ssu2g2528 338 SUPERFAMILY Cyclin-like 158 267 IPR036915 -
Ssu2g2528 338 Pfam Cyclin, N-terminal domain 65 173 IPR006671 -
Ssu2g2528 338 PANTHER CYCLIN-D3-2 35 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2528 Ssu-Chr2 84220348 84221597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2528 44 337 Core Cell Cycle Gene Families AT5G67260 49.051 8.10e-93 280
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2528 2 84220348 84221597 Ssu7g0441 7 8356897 8358134 PCT
Ssu6g1845 6 31899085 31900533 Ssu2g2528 2 84220348 84221597 PCT