Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2450 atgatcCAAGAACTGTTGGGTGGTGCTAGCCTCACAGCAGGAGAAAGGAAAATCTCCATTAATAACGGACGAGGACTTCTACTTACACCACCCACACCATCTTCTCCTTCTCCACCTCCTTCTTGCACAACGAGCGTCACCACTTCCGCCACCGCCGCCGCCACATCATCAAATTCAGAGAACCAAAATTTGAGGTGCCCTCGATGTGATTCATCAAACACAAAGTTCTGTTACTACAACAACTACAACCTCACTCAGCCTCGCCACTTTTGCAAGACATGTCGCCGGTACTGGACCAAAGGCGGTGCTCTCAGGAATGTTCCCATCGGAGGTGGCTGCCGGAAAAACAAGAACGCCGGCATGTCCAACTCGGCGGCAAAGCAAACCGCCACAAAGATGAAAGCAGTTGCATCAGAGCTTGGAAGGTCACCAGCAATCTTCGATCAAGAGCTTCCACAAACCCCAAACCTGTGGGGTTCACCGCAAAATACTCCACTGATGGCTTTACTAAGAGCTACCCAAAACcaaaaccctaaccctaaccctAGTCCCATGTCGATTGCTGTGAAGGGAGAGGGGAACTTAATGGGATCCCAGTCCCACATGGTGACTGAGCCATTGCTCGCTAATGGGTTGTTGAATCCTAGAACTCTAGGCTATGATGGTGTGGGAGAAGTTCCTTCACTTGGTCTATGCAGCTCCTTTTGGAGGAACAATCAAGATCAGAATCTGCAGCAAAATAACGGTTTTGTACTTGGAGAACATCAAAGTAGTGGAGTTCAAGAACTTTACCACAGGCTCAGGTCATCGTCATCAGTTAATTATTGTTGCAGTGATAACTCACCTGTCTTTCTAGGTAACATGTCTTCTCCCTCTTCTTTGTCCAACATTTTGGAGTCATCTTCAGTTTCTGGGAGTGAATTCGGGTGCTGGAATCCAACCCTTTCCTGGTCTGATCTTCCCACAACCAATGGAGCATATCCTTAA 987 0.4671 MIQELLGGASLTAGERKISINNGRGLLLTPPTPSSPSPPPSCTTSVTTSATAAATSSNSENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNAGMSNSAAKQTATKMKAVASELGRSPAIFDQELPQTPNLWGSPQNTPLMALLRATQNQNPNPNPSPMSIAVKGEGNLMGSQSHMVTEPLLANGLLNPRTLGYDGVGEVPSLGLCSSFWRNNQDQNLQQNNGFVLGEHQSSGVQELYHRLRSSSSVNYCCSDNSPVFLGNMSSPSSLSNILESSSVSGSEFGCWNPTLSWSDLPTTNGAYP 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2450 328 MobiDBLite consensus disorder prediction 41 65 - -
Ssu2g2450 328 PANTHER DOF ZINC FINGER PROTEIN DOF5.1-LIKE 16 326 - -
Ssu2g2450 328 ProSiteProfiles Zinc finger Dof-type profile. 64 118 IPR003851 GO:0003677|GO:0006355
Ssu2g2450 328 ProSitePatterns Zinc finger Dof-type signature. 66 102 IPR003851 GO:0003677|GO:0006355
Ssu2g2450 328 MobiDBLite consensus disorder prediction 23 65 - -
Ssu2g2450 328 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 326 IPR045174 GO:0003700|GO:0006355
Ssu2g2450 328 Pfam Dof domain, zinc finger 62 118 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2450 Ssu-Chr2 82864705 82865691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2450 31 125 C2C2-Dof Transcription Factor Family AT5G65590 61.458 8.10e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu2g2450 zf-Dof 3.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2450 - - gmx:778100 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2450 2 82864705 82865691 Ssu6g1924 6 34384615 34385622 PCT