Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1896 ATGTCACCCGATGACACACCACCTTCGAAGGCcgccacaacaacaacaaaagacgACGAGACTCAAGGCTCCGGTGGCCGGAAAAGCTCCTCAACAAGGCCTCAAGAGCAAGGTCTAAAGTGCCCTCGATGTGACTCACCCAACACCAAATTCTGCTACTACAACAACTACAGCCTCACGCAGCCAAGGCATTTCTGCAAGACGTGTAGAAGATACTGGACAAAAGGTGGGGCTTTGCGTAACGTCCCTATTGGAGGTGGTTGCAGGAAGAACAAGAAGGTGAAGTCATCAAGACTCTCATGTGATTCCAAGGACTCTGGCTCCTCCTCTTCAGACCTTGGTGGCCTAAAGTTCCTTCATGCTCTTTCTCCTTCCATGGACTTTCACCCTGGAGGGTTACCCTTCCCTAGGCTGCACCATCACCCTCCAACCCCTTATAACCACTTCTCTTCTTTTGGGGACACTTCTAGTGCTTCTTCCTGTTTCAACCTTGACCCTTCTTCTGGCACCTCAAGTTCTTTTGCTGCTCTTAATTACCCCTTTACTTACAATGGTGCAATCCAAGGCATGAGCTCTATGAACCTTCACACTAGCCTTGCTTCCTCCATTGAGTCTTTGAGTTCTATAAACCAGGACTTGCACTGGAAGCTGCAGCAGCAGCGATTGGCAATGCTGTTTACTGGAGACAACAGCCAGAAAGATAGTGGTAGTGGGGTGTCATCAACGGTTAACCAGCTTGAGAACCAGACACAGAAACCACAACCCATTCTTTTTCAGAATCTTGAGGTTTCAAAGCCAGGGATTTTCCCCGTTGGGAACTCCAGAAAAGAACAAGGTCCAAGTGGGGACGCACCCTCTACCGAGTGGTTCTTTGGGAATTCTTATGCCTCGGTGACTCCTACCCCTACCACCAGTAGTGGTGGCCCAGCGAATGATAATGCAAGCAATTGGAGTAGCGGTGTCCATGCTTGGGGCGATGTGCCGCAGCAATATAGCGCTTTGCCCTAG 1008 0.4881 MSPDDTPPSKAATTTTKDDETQGSGGRKSSSTRPQEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVKSSRLSCDSKDSGSSSSDLGGLKFLHALSPSMDFHPGGLPFPRLHHHPPTPYNHFSSFGDTSSASSCFNLDPSSGTSSSFAALNYPFTYNGAIQGMSSMNLHTSLASSIESLSSINQDLHWKLQQQRLAMLFTGDNSQKDSGSGVSSTVNQLENQTQKPQPILFQNLEVSKPGIFPVGNSRKEQGPSGDAPSTEWFFGNSYASVTPTPTTSSGGPANDNASNWSSGVHAWGDVPQQYSALP 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1896 335 MobiDBLite consensus disorder prediction 6 37 - -
Ssu2g1896 335 MobiDBLite consensus disorder prediction 271 335 - -
Ssu2g1896 335 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Ssu2g1896 335 MobiDBLite consensus disorder prediction 287 325 - -
Ssu2g1896 335 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Ssu2g1896 335 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 18 335 IPR045174 GO:0003700|GO:0006355
Ssu2g1896 335 MobiDBLite consensus disorder prediction 1 41 - -
Ssu2g1896 335 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 18 335 - -
Ssu2g1896 335 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Ssu2g1896 335 MobiDBLite consensus disorder prediction 229 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1896 Ssu-Chr2 70729731 70730738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1896 29 335 C2C2-Dof Transcription Factor Family AT5G65590 40.994 8.21e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu2g1896 zf-Dof 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1896 - - vun:114173233 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1896 2 70729731 70730738 Ssu5g1171 5 37963789 37964853 PCT