Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1585 ATGTCTGAGGTTATTAAAGACTCAGCCATAAAGCTGTTTGGTAGAACAATTTCTCTGCCACGCAACGAGGTTTCTGCTAATGGTTCCTCTTCTGAACCTGCTCCTCCTGAAGCTTGTTCTCATCACAGTCCTCcttcatcttcatcttttccACGTGAAGTGAGCTCTACAACGGAACATGAAGCTGAAAGGGATAAGGAACCATCAATGCAAGAACTCACCTCAACACAAGATGACGAGGCCTCACATCAAACCCCAGAGGAATTAAAATCTCCAACATCTTCAGGCAATCTCGAGAACCCCAAGACCCCCTCAACTGAAAGAGAAGTTTCGTTGCTGAAATCCTCCAGAAACGGAGACCAAAGCGACACCACAAGCGCGTCACAGGACAAAACTCCAAAGAAGCCAGACAAGGTACTTGCATGCCCTCGGTGCAACAGCATGGACACCAAGTTTTGCTACTACAACAACTACAACGTGAACCAGCCACGCCACTTCTGCAAGCACTGCCAGAGATATTGGACCGCAGGAGGAACCATGAGGAACGTGCCGGTGGGTGCCGGTCGCCGCAAGAACAAAAACTCTTCCTCTTCTGCATCGCATTATCGCCAAATGGTGGTTCCTGAGGCCCTTCAAACACCCAATGGATCATTGCACAGTGCTGTGTTGACCTTTGGATCAGATTCCCCTCTCTGTGACTCCATGGCTTCTGTGTTGAGCCTTGCAGAGAGAACACAAAATGGTGTCCTAAATGGCTTTCATGCGCCTAAGCAGAATACTAATAATAGTAATGGGGATGATAACTCAGTTGGTGCTTCTGTTGTGGCTTCAACTTTGTGTGAGAAGAGAGACAATGCTACTAGCCCACATGAAGAATCAGTGGATAAGAATTATCATCAAGGTTTCACTCCTCAATTGTGCTTCCCAGGTTCTTCTTCTGCTCCTTCTCCTTGGCCTTATCCATGGAACCCTACAATGACTCCTTCTGCCTTTTGCCAACCAAGCTATCCTGTGTCATTCTACCCCACACCAGCATTCTGGGGTTGCATGCCACCCTCTTGGAGTGTTAATTACCAATCTGCCTTTAGTTCTGGTCCAAATTCACCAACCTTGGGGAAACACTCAAGAGATGGGGACATCTTGGTTCAAAAGCCTGGCAAAGAAAGTAGCAGCATGGCAGGAAATAACAGTGTGTTGGTCCCCAAGACACTGAGAATTGATGACCCTACTGAAGCTGCAAAGAGCTCCATATGGTCAACACTGGGGATCAAGAATGAGAAGGGGAATTCTCTCAATGGAGGAGGCATTTTCAAGGCATTTGCATCAAAGGGTGATGACAAGAAACATGTGGTGGTTGAAGCATCCCCAGTGTTGCAAGCCAACCCTGCAGCTTTGTCGAGGTCCCTTGTCTTCCATGAGAGAACATAA 1428 0.4692 MSEVIKDSAIKLFGRTISLPRNEVSANGSSSEPAPPEACSHHSPPSSSSFPREVSSTTEHEAERDKEPSMQELTSTQDDEASHQTPEELKSPTSSGNLENPKTPSTEREVSLLKSSRNGDQSDTTSASQDKTPKKPDKVLACPRCNSMDTKFCYYNNYNVNQPRHFCKHCQRYWTAGGTMRNVPVGAGRRKNKNSSSSASHYRQMVVPEALQTPNGSLHSAVLTFGSDSPLCDSMASVLSLAERTQNGVLNGFHAPKQNTNNSNGDDNSVGASVVASTLCEKRDNATSPHEESVDKNYHQGFTPQLCFPGSSSAPSPWPYPWNPTMTPSAFCQPSYPVSFYPTPAFWGCMPPSWSVNYQSAFSSGPNSPTLGKHSRDGDILVQKPGKESSSMAGNNSVLVPKTLRIDDPTEAAKSSIWSTLGIKNEKGNSLNGGGIFKAFASKGDDKKHVVVEASPVLQANPAALSRSLVFHERT 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1585 475 ProSitePatterns Zinc finger Dof-type signature. 142 178 IPR003851 GO:0003677|GO:0006355
Ssu2g1585 475 Pfam Dof domain, zinc finger 137 194 IPR003851 GO:0003677|GO:0006355
Ssu2g1585 475 MobiDBLite consensus disorder prediction 56 73 - -
Ssu2g1585 475 ProSiteProfiles Zinc finger Dof-type profile. 140 194 IPR003851 GO:0003677|GO:0006355
Ssu2g1585 475 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 475 - -
Ssu2g1585 475 PANTHER CYCLIC DOF FACTOR 2 1 475 IPR045174 GO:0003700|GO:0006355
Ssu2g1585 475 MobiDBLite consensus disorder prediction 87 129 - -
Ssu2g1585 475 MobiDBLite consensus disorder prediction 20 55 - -
Ssu2g1585 475 MobiDBLite consensus disorder prediction 14 140 - -
Ssu2g1585 475 MobiDBLite consensus disorder prediction 251 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1585 Ssu-Chr2 63635298 63638680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1585 120 474 C2C2-Dof Transcription Factor Family AT3G47500 48.413 2.30e-89 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu2g1585 zf-Dof 4.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1585 - - gmx:100775201 657.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1585 2 63635298 63638680 Ssu2g1585 2 63635298 63638680 ECH
Ssu2g1585 2 63635298 63638680 Ssu1g2100 1 59841820 59844407 ECH
Ssu2g1585 2 63635298 63638680 Ssu6g1253 6 20363819 20366571 ECH
Ssu2g1585 2 63635298 63638680 Ssu6g1253 6 20363819 20366571 PCT