Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1535 atgacaTTGTACATGCCATTGTTCAGGTCATGTTCTAGCTTAAGGTCACTCACCCAACTCCACGCCCACCTCGTCGTCACCGGCCTCCACAACGACCCCCTTGCCTCCACGAAGCTCCTCGAGTCCTACGCCCAAATGGGTTCTCTCCATTCATCAAGACTCGTTTTTGATGCCCACCCATCTCCCGATTCCTTCATGTTCGGTGTCCTCATCAAGTGCTACCTCTGGCACCACTTGTTTGACCAAGTGGTTTCTCTCTACCATCACCACATTCAGAAGGGTTCCCACCTCACCCAAAACTGCACCTTCCTCTACCCTTCTGTTCTTAAAGCTGCTTCTTGCGTTGGTGACTTGGTCACGGGCAGGAAAGTGCATGGGAGGATAGTTACATCTGGGCTTGGCACTGATCATGTCATTGGTACTTCGTTGTTGGGCATGTACGGGGAGTTGGGGTGTTTGAGTGATGCTTGGAAGGTGTTCGATGAAATGCATGTGAGAGATTTGGTTTCGTGGAGTTCGGTTATCGCGTGTTATGTCGAGAATGGGCGGCCAGGAGAAGGGTTGGAGATGTTGTGTTGGATGGTTTCTGAGGGAATTGGACCGGACTCGGTTACGATGCTCGGCGTAGCTGAGGCTTGTGGCAAGGTTCGTTGCTTGAGGCTGGCGAAATCGGTACATGGATATGTGACCAGGAAAGAGATGGCTGGTGATGCGCGTTTGGGGAATTCTCTTATTGTTATGTACAGTCAGTGTGGTTACTTGTGTGGAGCAAAGAGGGTATTTGAAAGCCTCGCTCATCGAAGTACTGCTTGTTGGACTTCTATGATTTCGTCGTGTAATCAAAACAGGTGCTTTGGAGAGGCGATTGATGTTTTTAAGCAGATGCAGGAATCAGAAGTGGAAGTCAATGCTGTGACGATGATTAGTGTTCTGTGTTGCTGTGCTAGGTTAGGCTGGTTGAAAGAGGGAAAGTCAGttcattgttttattttgaggAGAGAAATGGATGGTGATGATCTTGATCTAGGGCCAGCACTGATGGATTTCTATGCCACTTGTTGGAAAATAAGCAGTTGCGAAAAGCTTCTTTGTTTAATTGGAAACAGCAGTGTTGTATCATGGAACACACTCATATCAATTTATGCACGGGAGGGTTTAAACGAGGAGGCCATGGTGCTATTTACACGTATGTTGGCAAAGGGGCTGATGCCGGACTCATTTAGCTTAGCAAGTTCTATTTCAGCCAGTGCAAATGCTGGTTCAATACGAGAGAAACTAGCAATTGCATTTGGAACAAATCAGTCCCATTTTAGAATGATAccatatttttag 1332 0.4625 MTLYMPLFRSCSSLRSLTQLHAHLVVTGLHNDPLASTKLLESYAQMGSLHSSRLVFDAHPSPDSFMFGVLIKCYLWHHLFDQVVSLYHHHIQKGSHLTQNCTFLYPSVLKAASCVGDLVTGRKVHGRIVTSGLGTDHVIGTSLLGMYGELGCLSDAWKVFDEMHVRDLVSWSSVIACYVENGRPGEGLEMLCWMVSEGIGPDSVTMLGVAEACGKVRCLRLAKSVHGYVTRKEMAGDARLGNSLIVMYSQCGYLCGAKRVFESLAHRSTACWTSMISSCNQNRCFGEAIDVFKQMQESEVEVNAVTMISVLCCCARLGWLKEGKSVHCFILRREMDGDDLDLGPALMDFYATCWKISSCEKLLCLIGNSSVVSWNTLISIYAREGLNEEAMVLFTRMLAKGLMPDSFSLASSISASANAGSIREKLAIAFGTNQSHFRMIPYF 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1535 443 PANTHER - 218 427 - -
Ssu2g1535 443 PANTHER - 13 214 - -
Ssu2g1535 443 PANTHER - 164 324 - -
Ssu2g1535 443 Gene3D Tetratricopeptide repeat domain 216 336 IPR011990 GO:0005515
Ssu2g1535 443 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Ssu2g1535 443 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 164 324 - -
Ssu2g1535 443 Pfam PPR repeat family 370 409 IPR002885 -
Ssu2g1535 443 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Ssu2g1535 443 Pfam PPR repeat 141 166 IPR002885 -
Ssu2g1535 443 Pfam PPR repeat 271 298 IPR002885 -
Ssu2g1535 443 Pfam PPR repeat 169 199 IPR002885 -
Ssu2g1535 443 TIGRFAM PPR: pentatricopeptide repeat domain 271 303 IPR002885 -
Ssu2g1535 443 TIGRFAM PPR: pentatricopeptide repeat domain 372 405 IPR002885 -
Ssu2g1535 443 TIGRFAM PPR: pentatricopeptide repeat domain 141 168 IPR002885 -
Ssu2g1535 443 TIGRFAM PPR: pentatricopeptide repeat domain 169 202 IPR002885 -
Ssu2g1535 443 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Ssu2g1535 443 Gene3D Tetratricopeptide repeat domain 339 435 IPR011990 GO:0005515
Ssu2g1535 443 Gene3D Tetratricopeptide repeat domain 93 215 IPR011990 GO:0005515
Ssu2g1535 443 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 218 427 - -
Ssu2g1535 443 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 13 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1535 Ssu-Chr2 62442038 62444531 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1535 2 62442038 62444531 Ssu2g1535 2 62442038 62444531 ECH