Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1514 ATGATGTCGTATCAATCAATGGAGGAGAGGAGGTTTGTGTGCAAGTATTGCAGCAAGAGGTTCCCTTGTGGGAAGTCTCTCGGTGGCCACATCAGGACTCACATGAGTGAGCATTCAGCTTTAGGCAAAGAAGAGAGGAGTAATGCTGCTAGTGCTATGTTCAAGTTTGATGGtgggagaaaaaggaagagggaTTTGGGGTCTGAAGCTGATGGTGGTGGGGGGAACAATAACGTCATTTATGGCCTGAGAGAGAACCCCAAGAAGACCACGAGGTTTGTGCACTCCAATGCCACTTTGCAACTTGACAAGTTCTGCAAAGAATGTGGGAAAGGCTTTCCATCATTGAAGGCTCTTTGCGGTCACATGGCTTGTCACTCTGAAAAGGACAAGGGAGCCAGCAACAGGTTTGAGAGCAATTCTGGGTTTGTTGAGAAGCAGAAATTGGTTATGGATAGTCAATCTGATACTGAGACTTCTGCTCCAAGGAGGTCCAAGAGAATGAGGCTCAAGACCCTTAGCACCACCAACAACCAACCTCAATCTTCTTCTGTGTCCGAGGTTGAGCAGGAGCAAGAAGAGGTGGCTAAGTGTTTGATGATGTTGTCCAAGGATTCTAGCTATAAGGGTCGTTTTTCTTTGGTCACAGAGTCTTCTGATAACAACTCGGTTGTTCTGGAAAAGTCACCTTCTCTTGATACCAAGGTTACTACTATGATGAATAGTAACGGTAAGAATTCTATGTCTAGTGCTTATGTGGGGAAGAAGCTGCAGCTGCAGCACAAGGACATGAAGTTTAAGTCTGCTGAGATTGGCTATGATTCTGATAATTCAGATTCCGGGTATTTTAGATATGGTCCTAAGAAGGTTGACTCGGGTGATTCAAATGATGGGTTTTTCAGGAATGAGGTTAAGTCTTCGAAAGTGGGGTACTTGTCTGGGTTTGAGGATTATGATGTTGAATCCAGGAAGGTGCTGGGCAGAGGAAGAAGCAGGAGCGctgaatttaagaaatttgttttGGAGGATTGGGAGAATGATAGAGAAGATGGGGCTGCAAGGAGATTTGATTCAAGGAAATTTAAGAAATCCAACTATGATTCTCTTGGTCAAAATTTAGGTGGTGGGGTTTCTAGCAGGAAGATAGGAAATGGTTTTACCAATGATGGGATCAACAAGTATGAGTGCTTGACTAGTGAAAGGGACAATGGTTCTGATGATTCGGCTTATGAGAGTGATGAGAACAGCACAGACACTGATTCTTATCCTGCTCCAAAGGCTCACAGCAGCAGGAACCTCAGTGGGCAGAAGGGGAAGAAGAAATTGAAGTCAAAGAAAAGCAAGGCACATGAGTGCCCAATTTGCAACAAAGTTTTCAGGTCAGGCCAAGCCTTGGGGGGTCACAAAAGATCCCATTTTGTTGGAGGTTCTGAGGAAAACACCCTGGTGATAAGGCCAGGTGCTCCTGCTGTTCCTTGCCTCATTGATCTCAATCTACCAGCACCTGTTGATGAATAG 1518 0.4401 MMSYQSMEERRFVCKYCSKRFPCGKSLGGHIRTHMSEHSALGKEERSNAASAMFKFDGGRKRKRDLGSEADGGGGNNNVIYGLRENPKKTTRFVHSNATLQLDKFCKECGKGFPSLKALCGHMACHSEKDKGASNRFESNSGFVEKQKLVMDSQSDTETSAPRRSKRMRLKTLSTTNNQPQSSSVSEVEQEQEEVAKCLMMLSKDSSYKGRFSLVTESSDNNSVVLEKSPSLDTKVTTMMNSNGKNSMSSAYVGKKLQLQHKDMKFKSAEIGYDSDNSDSGYFRYGPKKVDSGDSNDGFFRNEVKSSKVGYLSGFEDYDVESRKVLGRGRSRSAEFKKFVLEDWENDREDGAARRFDSRKFKKSNYDSLGQNLGGGVSSRKIGNGFTNDGINKYECLTSERDNGSDDSAYESDENSTDTDSYPAPKAHSSRNLSGQKGKKKLKSKKSKAHECPICNKVFRSGQALGGHKRSHFVGGSEENTLVIRPGAPAVPCLIDLNLPAPVDE 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1514 505 ProSitePatterns Zinc finger C2H2 type domain signature. 14 34 IPR013087 -
Ssu2g1514 505 SUPERFAMILY beta-beta-alpha zinc fingers 8 38 IPR036236 -
Ssu2g1514 505 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Ssu2g1514 505 MobiDBLite consensus disorder prediction 171 189 - -
Ssu2g1514 505 ProSitePatterns Zinc finger C2H2 type domain signature. 452 472 IPR013087 -
Ssu2g1514 505 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 7 505 - -
Ssu2g1514 505 MobiDBLite consensus disorder prediction 415 432 - -
Ssu2g1514 505 MobiDBLite consensus disorder prediction 397 448 - -
Ssu2g1514 505 ProSiteProfiles Zinc finger C2H2 type domain profile. 12 39 IPR013087 -
Ssu2g1514 505 MobiDBLite consensus disorder prediction 151 190 - -
Ssu2g1514 505 MobiDBLite consensus disorder prediction 433 447 - -
Ssu2g1514 505 ProSiteProfiles Zinc finger C2H2 type domain profile. 450 472 IPR013087 -
Ssu2g1514 505 Pfam C2H2-type zinc finger 11 37 - -
Ssu2g1514 505 Pfam C2H2-type zinc finger 106 128 - -
Ssu2g1514 505 Pfam C2H2-type zinc finger 449 472 - -
Ssu2g1514 505 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 131 IPR013087 -
Ssu2g1514 505 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 7 505 - -
Ssu2g1514 505 SUPERFAMILY beta-beta-alpha zinc fingers 105 472 IPR036236 -
Ssu2g1514 505 SMART c2h2final6 104 126 IPR013087 -
Ssu2g1514 505 SMART c2h2final6 450 472 IPR013087 -
Ssu2g1514 505 SMART c2h2final6 12 34 IPR013087 -
Ssu2g1514 505 Gene3D Classic Zinc Finger 88 166 - -
Ssu2g1514 505 Gene3D Classic Zinc Finger 2 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1514 Ssu-Chr2 62095037 62096554 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu2g1514 zf-C2H2_6 1.7e-07 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1514 2 62095037 62096554 Ssu2g1514 2 62095037 62096554 ECH