Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1444 ATGGGTAGGGGAAAGGTGGAGCTGAAGAGGATTGAGAACAAGATAAACCGTCAAGTGACATTTGCAAAGAGGAGGAACGGGTTGCTCAAGAAGGCTTATGAACTCTCTGTCCTCTGTGATGCTGAGGTTGCCCTCATTATCTTCTCCAACCGTGGGAAACTCTATGAGTTCTGCAGTGGCCATAGCATAGCCAAGACACTTGAACGGTATCACAGATGCAGTTATGGAGCCTTGGAAGTACACCACCAACCTGAAATAGAGACACAGAGGCGCTACCAAGAGTACCTGAAGCTAAAATCTAAAGTTGAGGGACTACAGCAAACACAAAGAAACCTCCTTGGGGAAGAATTGGAGCACTTAGATATTAAGGAGCTAGAGCAGCTTGAACGTCAGCTGGACTCTTCCTTGAAGCAAATCAGGTCTAACAAGACACAACAGATGCTTGATCAACTCTCTGATTTGCATAGAAAGGAAGAGATGCTACTGGAAACTAATAATATCCTGAGGAACAAGTTGGAGGAAGTTAATATATCCCTTCAACCAACATGGGAAGCTAGGGAGCAAAATGCTCCCTACAATTGCCACCCTCCCCAATCAGATGGATATTATGAGACACCACATTGCAACAGTACATTGCGAATTGGTTATGATTCTTCAGTGTTAAATGAAGCAGAGGGAGCCGCAGGAACCTCAGCCCAAAATGCTAGTGAATTCATGCACGGATGGATGGGCTGA 735 0.4517 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGHSIAKTLERYHRCSYGALEVHHQPEIETQRRYQEYLKLKSKVEGLQQTQRNLLGEELEHLDIKELEQLERQLDSSLKQIRSNKTQQMLDQLSDLHRKEEMLLETNNILRNKLEEVNISLQPTWEAREQNAPYNCHPPQSDGYYETPHCNSTLRIGYDSSVLNEAEGAAGTSAQNASEFMHGWMG 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1444 244 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Ssu2g1444 244 PANTHER MADS BOX PROTEIN 1 230 - -
Ssu2g1444 244 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu2g1444 244 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Ssu2g1444 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ssu2g1444 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ssu2g1444 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu2g1444 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu2g1444 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu2g1444 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ssu2g1444 244 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Ssu2g1444 244 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu2g1444 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ssu2g1444 244 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 230 - -
Ssu2g1444 244 Coils Coil 122 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1444 Ssu-Chr2 59890285 59900389 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu2g1444 K-box 2.1e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1444 2 59890285 59900389 Ssu2g1444 2 59890285 59900389 ECH
Ssu2g1444 2 59890285 59900389 Ssu3g0321 3 5907535 5914151 ECH
Ssu2g1444 2 59890285 59900389 Ssu8g2183 8 57567296 57572641 ECH