Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1443 atgGGAAGGGGTAGGGTACAGCTGAAGAGGATAGAGAACAAGATCAATCGCCAGGTAACTTTCTCCAAAAGGAGAGGTGGGTTGCTCAAGAAAGCTCATGAGATCTCTGTACTCTGTGATGCTGAGGTAGCTTTGATTGTCTTCTCTCACAAGGGAAAGCTCTTTGAGTATGCAACTGATTCATGTATGGAGAAGATACTGGAACGCCATGAAAGGTATGCCTATGCAGAGAGGCAGCTAGTAGGAAATGATTCTGAGACACAGGGAAACTGGACCATTGAATATGCTAGACTCAAGGCAAAGATTGACCTTTTGCAGAGAAACCACAGGCACTATGTGGGAGAAGATTTGGCTTCCATGAGCCTCAAAGAGCTTCAGAGTTTGGAGCAGCAGTTAGATACTGCTCTCAAAAACATTCGCACAAGGAGGAACGATCTCATGTACGAGTCCATTTCTGAGCTTCAGAAAAAGGAGAAAAGGATACAAGAGCAGAATAACATCCTCGCAAAAAAGATCAAGGAGAAAGAGCAGGCTGTAGCACAGCAGGCTGCACAATGGGAGCAGCCAAACTATGGGGTTAATACATCTTTCATGCCACAGCAACAACCCCTTCCCAGTTTGAACATAGGTGGCAATAATTACCATCAGGAAGCACCAGAACTAGGAAGGAACGGCCTTGACCTGACCCTGGAACCACTGTATTCTTGCCACCTTGGATGCTTCTGA 726 0.4573 MGRGRVQLKRIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATDSCMEKILERHERYAYAERQLVGNDSETQGNWTIEYARLKAKIDLLQRNHRHYVGEDLASMSLKELQSLEQQLDTALKNIRTRRNDLMYESISELQKKEKRIQEQNNILAKKIKEKEQAVAQQAAQWEQPNYGVNTSFMPQQQPLPSLNIGGNNYHQEAPELGRNGLDLTLEPLYSCHLGCF 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1443 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ssu2g1443 241 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Ssu2g1443 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ssu2g1443 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 218 - -
Ssu2g1443 241 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 218 - -
Ssu2g1443 241 Coils Coil 118 145 - -
Ssu2g1443 241 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Ssu2g1443 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ssu2g1443 241 Coils Coil 151 181 - -
Ssu2g1443 241 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu2g1443 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ssu2g1443 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu2g1443 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu2g1443 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu2g1443 241 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu2g1443 241 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1443 Ssu-Chr2 59872705 59876488 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu2g1443 K-box 3.9e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1443 2 59872705 59876488 Ssu2g1443 2 59872705 59876488 ECH
Ssu2g1443 2 59872705 59876488 Ssu3g0320 3 5872175 5882279 ECH
Ssu2g1443 2 59872705 59876488 Ssu8g2182 8 57466305 57543524 ECH