Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1433 atgcactGTTGCTTCGTAGCAACAACACATTCGCAGAGCctctttgtttgtttgagaGAGAACCTCCGAAATTTTGGTGTGGCAGATCACGAATCCTCTGGAACTGCAATGGCTTTTATGTCGGAGGTCAACATGAGCTTCTCTCACTACATGGATGATGAATATGAGAAACTTTTCCGCAGAATGAACCCTCCCAGGGTTGTAATCGATAATGAAGCCTGCAAGAATGCCACTGTTATACGGGCTGACAGTGCAAACAAGCATGGAATACTTCTTGAAGTTGTACAAATCCTTACTGATCTAAACCTTGTTATAACTAAGGCTTACATATCTTCTGATGGTGGATGGTTCATGGATgTTTTTAATGTTACTGACCAAGATGGAAACAAGGTTACCGATGAAGCCATTTTGGATTACATTAGAAAGtctcttgGTCCCGAATCTTGTGTTACATCTCCCATGAGATCTGTTGGGGTTAAGCAAACAATGGACCACACTGCAATTGAGCTTATGGGGAGGGATAGGCCAGGACTACTTTCAGAAGTGAGTGCTGTTCTGACCAACCTCAAGTGCAATATAGTGAATGCAGAGGTGTGGACTCACAACACCCGTGCAGCTGCGGTAATGCATGTAACTGATGTAGAAACTGGGTCTGCCATCACTGACCTTCAGAGGCTCTCTATAATCAAGGAGCTTCTATGCAATGTGCTTGGTGGTGGCAACAAGAGGGGGGCTAAGACTGTTGTCACAGATGAAGTCACACACACTGAGAGAAGGCTTCACCAAATGATGTTTGCTGATAGGGATTATGAACGAGTTAATGTTGATGACTTTGATGAGAAGCAAAGGCCAAAtgtgaatgttgtgaattggtATGACAAAGATTATTCTGTAGTCACTATTCAGTGTAAGGATAGGCCAAAGCTTCTCTTCGACACAGTTTGTACTTTGACAGACATGCAGTATGTGGTTTTTCATGCAAATATCGATGCTGAGGGGCCACAAGCATATCAGGAATTTTACATCAAGCATATTGATGGGTCCCCTGTGAAATCAGATGCAGAAAGACAAAGAGTGATACAATGTCTTGCAGCTGCAATTGAGAGAAGAGTTTCTGAGGGTTTGAAGCTAGAACTCTGCACCACCGACAGAGTTGGACTACTATCTGATGTCACACGTATCTTCAGAGAGAATAGCCTCACAGTTACAAGGGCAGAAGTGGCCACAAAAGGAGGCAAAGCTGTCAACACTTTCTATGTTCGTGGGGCTTCTGGTTTCCCTGTTGATTCCAAGACCATAGAATCCATCAGGCAAACAATTGGCAACACGATCCTTAAAGTAAAGGGTAGCCCTGAAGAGTCGAAATCTGTTCCTCAGGATTCTCCTACCAGATCCCTCTTTAGCGGTCTTTTCAAGTCCAGATCTTTCGTGAACTTTGGCTTGGTTAAGTCTTATTCTTGA 1461 0.4216 MHCCFVATTHSQSLFVCLRENLRNFGVADHESSGTAMAFMSEVNMSFSHYMDDEYEKLFRRMNPPRVVIDNEACKNATVIRADSANKHGILLEVVQILTDLNLVITKAYISSDGGWFMDVFNVTDQDGNKVTDEAILDYIRKSLGPESCVTSPMRSVGVKQTMDHTAIELMGRDRPGLLSEVSAVLTNLKCNIVNAEVWTHNTRAAAVMHVTDVETGSAITDLQRLSIIKELLCNVLGGGNKRGAKTVVTDEVTHTERRLHQMMFADRDYERVNVDDFDEKQRPNVNVVNWYDKDYSVVTIQCKDRPKLLFDTVCTLTDMQYVVFHANIDAEGPQAYQEFYIKHIDGSPVKSDAERQRVIQCLAAAIERRVSEGLKLELCTTDRVGLLSDVTRIFRENSLTVTRAEVATKGGKAVNTFYVRGASGFPVDSKTIESIRQTIGNTILKVKGSPEESKSVPQDSPTRSLFSGLFKSRSFVNFGLVKSYS 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1433 486 CDD ACT_ACR_3 296 370 - -
Ssu2g1433 486 Gene3D - 162 234 - -
Ssu2g1433 486 SUPERFAMILY ACT-like 372 441 IPR045865 -
Ssu2g1433 486 ProSiteProfiles ACT domain profile. 376 452 IPR002912 -
Ssu2g1433 486 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-LIKE ISOFORM X1 46 484 - -
Ssu2g1433 486 SUPERFAMILY ACT-like 162 213 IPR045865 -
Ssu2g1433 486 ProSiteProfiles ACT domain profile. 167 253 IPR002912 -
Ssu2g1433 486 SUPERFAMILY ACT-like 74 142 IPR045865 -
Ssu2g1433 486 CDD ACT_ACR_1 77 147 - -
Ssu2g1433 486 Pfam ACT domain 78 138 IPR002912 -
Ssu2g1433 486 Pfam ACT domain 168 219 IPR002912 -
Ssu2g1433 486 ProSiteProfiles ACT domain profile. 79 158 IPR002912 -
Ssu2g1433 486 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 46 484 IPR040217 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1433 Ssu-Chr2 59214287 59217923 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1433 2 59214287 59217923 Ssu2g1433 2 59214287 59217923 ECH