Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1359 ATGCTTACCAAGTACCTAACTCTGATCTACACTCATCTCAAATGGGTGTTAGATTTCCTTCTCTACTATCCCTTTTTCATGCTCCACGATTCTCAGCCACCCATAAATATTGAAGAAGAGTTGAGCGCATTCCATTATGAATTCACCTCTGGCTCAGAGGAATATGTGGATTGTGCTGTGTGTCTCCGCAAAATTGGAGAAGGAGATGGGGAGATTAGAGTGCTTAGATGTGAGCATGTCTTTCACAAAGGTTGTTTGGATAGATGGGTTGGTTTCAAGAATGCCACGTGTCCTCTTTGCAGAGGATCAGTGGGTTCAACAGGGCCTCTCACTCACTCTGGAGCGGaggttttgttttttcaattttgttcgTTCCAAAAGCCTAACCGTGAGACATGGTGGCTTCGCTGA 411 0.4282 MLTKYLTLIYTHLKWVLDFLLYYPFFMLHDSQPPINIEEELSAFHYEFTSGSEEYVDCAVCLRKIGEGDGEIRVLRCEHVFHKGCLDRWVGFKNATCPLCRGSVGSTGPLTHSGAEVLFFQFCSFQKPNRETWWLR 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1359 136 SMART ring_2 58 100 IPR001841 -
Ssu2g1359 136 Pfam Ring finger domain 57 101 IPR001841 -
Ssu2g1359 136 PANTHER RING ZINC FINGER PROTEIN-RELATED 2 129 - -
Ssu2g1359 136 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 107 IPR013083 -
Ssu2g1359 136 SUPERFAMILY RING/U-box 57 106 - -
Ssu2g1359 136 ProSiteProfiles Zinc finger RING-type profile. 58 101 IPR001841 -
Ssu2g1359 136 SMART ringv_2 57 101 IPR011016 GO:0008270
Ssu2g1359 136 CDD RING-H2 58 101 - -
Ssu2g1359 136 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 2 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1359 Ssu-Chr2 57428166 57428576 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1359 44 117 C3H Transcription Factor Family AT1G15100 43.243 2.72e-13 61.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1359 2 57428166 57428576 Ssu2g1359 2 57428166 57428576 ECH