Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu2g1357 | ATGTTCATGAAGTACTTAACTTTATTTTACACTCATCTGAAATGGGTGTTAGATTTCCTTCTGTATTATCCCTTCTACAAGCTCCATGATCCTCAAATGCCACTACTTGGGGAAGACCAAAGCATATGCCACTATGCACCTACCCCTGGCTTAGAGGAAGATGTTGATTGTGCCGTGTGTCTATGCAAAATTGGGGATGGTGAAGAGATTAGAGTTCTTAGGTGTGAGCATTTCTTTCATAGAAATTGCTTGGATACATGGGTTGGTCTCAAAATTGCCACTTGCCCTCTGTGCAGAGAACCAGTGAGACCAAGAAGGCCCATCAATGAGGTTGGAGCTGAAGTTCTATTGTTTCAGTTTTGTGCTATCCACACTGATGACCGTGATAACTGGTGGCTACGCTGA | 405 | 0.4321 | MFMKYLTLFYTHLKWVLDFLLYYPFYKLHDPQMPLLGEDQSICHYAPTPGLEEDVDCAVCLCKIGDGEEIRVLRCEHFFHRNCLDTWVGLKIATCPLCREPVRPRRPINEVGAEVLLFQFCAIHTDDRDNWWLR | 134 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu2g1357 | 134 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED | 3 | 127 | - | - | |
| Ssu2g1357 | 134 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 3 | 127 | - | - | |
| Ssu2g1357 | 134 | Pfam | Ring finger domain | 56 | 99 | IPR001841 | - | |
| Ssu2g1357 | 134 | SUPERFAMILY | RING/U-box | 51 | 110 | - | - | |
| Ssu2g1357 | 134 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 47 | 112 | IPR013083 | - | |
| Ssu2g1357 | 134 | SMART | ring_2 | 57 | 98 | IPR001841 | - | |
| Ssu2g1357 | 134 | ProSiteProfiles | Zinc finger RING-type profile. | 57 | 99 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu2g1357 | Ssu-Chr2 | 57370912 | 57371316 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu2g1357 | 53 | 102 | C3H Transcription Factor Family | AT1G80400 | 48.000 | 4.17e-13 | 63.2 |
Event-related genes