Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1355 ATGTCGGCGGCGTCGCCGTCTCCGGTGTCATCCACGGCTGCGCCACCGCCACAAACACCACCCTCCTCCACCACTAGTCCCTTACCGTCCAACGCCACCACTCCACCGCCGCAACAACCCCCTTCTTCCACTCCACCGCCGCAACAACCAGCTTCGCCACCGCCGTCAACCCCATCTCCGGCGGTTCCGCCGTCACCGCCGCCTAGTTCTCCGCCTCCCCCCATGTCTGGAACCCCGCCTCCATTAGCACCTCCACCATCACCCCCTCCATCACCACCGTCATCTTCCCCGCCGCCATCTTCTCCGGCAGCGCCGCCACCTTCTCGGGCGGCACCGCCACCGGTGCCACCTACAAGCTCTCCACCACCATCAGCTTCAGTTCCATCAAGAAGTcctccaccaccgccaccaccagcAAACCCTCCTAACAACACATCTCCGCCACCAgctccaccaccacaaccatcagcTCCACCACCTAACAACacttcaccaccaccacctcaaAATTCACCACCTCCTCCGGCCGCCACCCCACCACCGGCCTCGCCACCACAAAATTCACCACCCCCTCCGGCTGCGCCGCCCCCCAGAAACTCCACTAGGTCACCACCGCCGGTAAATTCACCGCCACCGCCAAGGTCATCACCGCCACCAGCACTGGCACCATCCACCCCTCCTTCTAGGCTTAGCCCTCCCACTCCAAGTTCTCAACCAAGTCCACCTCCAAATTCTACATCAAAGtcatcacctccaccaccaccttcaATTACTCAATTGGCCCCACCCCCGCCGCCATCGCGAGTTTCATCGCCTCCACCGCCGCCGCAGAATGGAACAGAAAACTCAAGCCCTCGTGGGGGTGGAGGTGGAATTAGCACTGGTGGTGTAGTGGCTATTAGTGTGGTGGCTGGATTTCTGGTGCTTGGCTTCATTGGTGTTCTTATGTGGTGCATGAGGAGGCAAAAGAGAAAGGTGCCTGTGAATGGTGGTTATGTCATGCCATCGACTCATGTCTCATCTCCTGAATCAGATTCATCCTTTTTAAAGACACACTCCTCAGCCCCTCTTGTACAAAGTGGCTCTGGCAGTGATGTTGTGTACACACCATCTGACCCTGGTGGACTAGGCCACTCAAGGTCATGGTTTTCATATGAAGAATTAGTCACGGCCACAAATGGTTTCTCAACTCAAAATCTTTTGGGTGAGGGTGGGTTTGGTTCCGTGTACAAAGGTTGCCTTCCTGATGGGAGAGAGATAGCAGTCAAGCAGCTGAAGATTGGTGGAGGTCAGGGGGAGAGAGAATTCAAAGCTGAAGTGGAAATCATTAGTCGCATACATCATCGCCATTTGGTTTCTTTAGTGGGATACTGTATTCAAGACAACAGAAGACTACTTGTCTATGACTATGTTCCTAACAATACCCTTTATTTTCATCTACATGGGGAAGGCCAGCCTGTGCTAGACTGGGCAAACCGTGTTAAAATTGCTGCCGGTGCAGCCCGAGGAATAGCTTATCTCCATGAAGACTGCAACCCTCGGATCATTCACAGGGATATCAAGTCATCAAACATTCTTTTGGATTACAACTATGAAGCTTGGgTCTCAGATTTTGGGCTAGCCAAATTAGCTCTTGATGCAAATACACATGTAACCACACGAGTCATGGGAACTTTTGGGTATGTTGCCCCTGAATATGCATCAAGTGGCAAATTGACTGAGAAGTCTGATGTATATTCTTTTGGAGTCGTGCTTTTGGAGCTCATTACCGGACGGAAGCCAGTAGATGTATCCCAACCTTTGGGAGATGAGAGCCTAGTTGAATGGgctCGACCTTTGCTGAGTCACGCACTTGATACTGAGGAATTCAATAGTTTGGCAGATCCAAGGCTAGAAAAGAATTATGTTGAGAGTGAATTGTATTGCATGATTGAAGTTGCTGCTGCTTGTGTGCGGCATTCAGCTGCGAAGAGACCTCGCATGGGACAGGTTGTTAGAGCTTTTGATAGCTTAGCAGGTTCAGATCTGACTAATGGAATGCGACTTGGGGAAAGCGAGGTGTTTGACTCTGCGCAGCAATCTGAAGAAATAAGATTATTTCGGAGGATGGCATTTGGTAGTCAAAATTATAGCACAGATTTCTTTAGCCATGCTAGTTTGAATACATGA 2169 0.4924 MSAASPSPVSSTAAPPPQTPPSSTTSPLPSNATTPPPQQPPSSTPPPQQPASPPPSTPSPAVPPSPPPSSPPPPMSGTPPPLAPPPSPPPSPPSSSPPPSSPAAPPPSRAAPPPVPPTSSPPPSASVPSRSPPPPPPPANPPNNTSPPPAPPPQPSAPPPNNTSPPPPQNSPPPPAATPPPASPPQNSPPPPAAPPPRNSTRSPPPVNSPPPPRSSPPPALAPSTPPSRLSPPTPSSQPSPPPNSTSKSSPPPPPSITQLAPPPPPSRVSSPPPPPQNGTENSSPRGGGGGISTGGVVAISVVAGFLVLGFIGVLMWCMRRQKRKVPVNGGYVMPSTHVSSPESDSSFLKTHSSAPLVQSGSGSDVVYTPSDPGGLGHSRSWFSYEELVTATNGFSTQNLLGEGGFGSVYKGCLPDGREIAVKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIQDNRRLLVYDYVPNNTLYFHLHGEGQPVLDWANRVKIAAGAARGIAYLHEDCNPRIIHRDIKSSNILLDYNYEAWVSDFGLAKLALDANTHVTTRVMGTFGYVAPEYASSGKLTEKSDVYSFGVVLLELITGRKPVDVSQPLGDESLVEWARPLLSHALDTEEFNSLADPRLEKNYVESELYCMIEVAAACVRHSAAKRPRMGQVVRAFDSLAGSDLTNGMRLGESEVFDSAQQSEEIRLFRRMAFGSQNYSTDFFSHASLNT 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1355 722 SUPERFAMILY Protein kinase-like (PK-like) 377 666 IPR011009 -
Ssu2g1355 722 CDD STKc_IRAK 401 671 - -
Ssu2g1355 722 ProSiteProfiles Protein kinase domain profile. 395 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1355 722 MobiDBLite consensus disorder prediction 10 280 - -
Ssu2g1355 722 PANTHER BNACNNG34790D PROTEIN 145 717 - -
Ssu2g1355 722 Gene3D Phosphorylase Kinase; domain 1 375 470 - -
Ssu2g1355 722 SMART serkin_6 395 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1355 722 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 145 717 - -
Ssu2g1355 722 Pfam Protein tyrosine and serine/threonine kinase 397 666 IPR001245 GO:0004672|GO:0006468
Ssu2g1355 722 ProSitePatterns Protein kinases ATP-binding region signature. 401 423 IPR017441 GO:0005524
Ssu2g1355 722 Gene3D Transferase(Phosphotransferase) domain 1 471 682 - -
Ssu2g1355 722 ProSitePatterns Serine/Threonine protein kinases active-site signature. 515 527 IPR008271 GO:0004672|GO:0006468
Ssu2g1355 722 MobiDBLite consensus disorder prediction 1 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1355 Ssu-Chr2 57216156 57220767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1355 165 714 Trihelix Transcription Factor Family AT1G70460 48.973 1.56e-173 512
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Ssu2g1355 PK_Tyr_Ser-Thr 8.4e-44 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1355 2 57216156 57220767 Ssu2g1355 2 57216156 57220767 ECH