Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1343 ATGATGCCGCCTCAGCAACTAACAACTATCACATCAAACATTCCGGCCGTCCCCAACCGGCCGGAAAATAGCTCCGTCCATGCTGAGCCACCAAGCCCCTCCACCAATGACATCAAACCCTCTTTGATGAGCAATGACATTCACAACAATAATTCTCAGCACCGCCCTGCTCCTTCAGCCGCCAGATTTTCTATTCTTCACCAATCCTTGCGCCCCGTTACCCTCAAATTTGAGGATGTTTCCTACAACATAACCTTTGGAAGGGGCAAGAATGATTGTGTATCTTCACAAAAGCCAAACCTCAAAAGGAAAGTGCTGAATGGTGTGACAGGTATGGTGGGGCCAGGGGAGGTGATGGCAATGTTGGGTCCCTCAGGGAGTGGCAAGACCACCTTACTCACCGCCCTCGCCGGCCGTCTCATTGGAAAACTCTCTGGGGCAGTCACATACAACGACCACCCTCTCTCTAGTTCTATGAGGCGTAGCATAGGGTTTGTGTCCCAAGATGATATGTTATACCCTCACCTCACCGTGCTTGAGACTCTGACTTATGCTGCTATGTTGAAACTTCCTAAGAGTTTGACtaaggaagagaaaatgaagcaaGTTGAAATGATCATTGTAGAACTAGGGTTGTCCCAGTGCCAGAATAGCCCTATTGGTGGCGGTGGCACCTTGTTCCGGGGGATTTCCGGTGGGGAGCGAAAGCGGGTCAGCATCGGGCAAGAGATGTTGGTGAACCCAAGTTTGTTGTTGCTCGATGAGCCGACGTCCGGGTTGGACTCCACCACGGCCCAGCGCATCGTGGCGATGCTCCAGAGTCTCGCTCGAGGCGGCCGGACGGTGGTGACCACCATTCACCAGCCTTCAAGCCGGTTGTATTGGATGTTTGACAAGGTGGTGGTGTTGTCGGATGGGTACCCGATTTTTATTGGGCAGGCGGGTCAAGTCATGGATTATCTTGAGTCCATTGGGTTTGTACCCGCTTTCAACTTCATGAACCCAGCTGATTTTCTGCTTGACCTTGCTAATGGCATAGTTGTTGATGTCAAACAGGATGAGCAGATATATCACCATGAGGATCAAGCTTCAATCAAACAGTTACTAGTTTCGTCTTATAAGAAGAACTTATACCCTCTTCTCAAACAAGAGATTCAACAGAATCATAAAGAACTAGCATTTTTTACTTTAGGAACATCCAGAAGTTCTGAGAACCAATGGACCACTAGCTGGTGGGAGCAATTCATGGTTCTGCTTATAAGGGGTTTAAAGGAAAGGAGGTATGAATCTTACTCAGGCTTAAGGATTTTCCAAGTCTTGTCTGTCTCAATTCTCTCAGGACTCCTGTGGTGGCATTCTGATCCCTCACATATACAAGACCAGGTATCTTGA 1392 0.4792 MMPPQQLTTITSNIPAVPNRPENSSVHAEPPSPSTNDIKPSLMSNDIHNNNSQHRPAPSAARFSILHQSLRPVTLKFEDVSYNITFGRGKNDCVSSQKPNLKRKVLNGVTGMVGPGEVMAMLGPSGSGKTTLLTALAGRLIGKLSGAVTYNDHPLSSSMRRSIGFVSQDDMLYPHLTVLETLTYAAMLKLPKSLTKEEKMKQVEMIIVELGLSQCQNSPIGGGGTLFRGISGGERKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAQRIVAMLQSLARGGRTVVTTIHQPSSRLYWMFDKVVVLSDGYPIFIGQAGQVMDYLESIGFVPAFNFMNPADFLLDLANGIVVDVKQDEQIYHHEDQASIKQLLVSSYKKNLYPLLKQEIQQNHKELAFFTLGTSRSSENQWTTSWWEQFMVLLIRGLKERRYESYSGLRIFQVLSVSILSGLLWWHSDPSHIQDQVS 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1343 463 ProSitePatterns ABC transporters family signature. 230 244 IPR017871 GO:0005524
Ssu2g1343 463 Pfam ABC transporter 106 258 IPR003439 GO:0005524
Ssu2g1343 463 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 325 IPR027417 -
Ssu2g1343 463 MobiDBLite consensus disorder prediction 1 58 - -
Ssu2g1343 463 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 46 462 - -
Ssu2g1343 463 Pfam ABC-2 type transporter 287 394 IPR043926 GO:0140359
Ssu2g1343 463 Gene3D - 78 324 IPR027417 -
Ssu2g1343 463 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 46 462 - -
Ssu2g1343 463 SMART AAA_5 115 308 IPR003593 -
Ssu2g1343 463 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 75 330 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1343 Ssu-Chr2 56840621 56844161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1343 104 306 Calmodulin-binding Proteins AT2G36910 30.622 7.03e-13 69.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1343 2 56840621 56844161 Ssu2g1343 2 56840621 56844161 ECH