Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1342 ATGACGGACATCACCGACGATGTAGCGGAGGACATCTCCTTCCAGCTCTTCGACGATGACTGTAGATTGCTAGGGAACCTTCTCAAAGACGTGTTGCAGAGAGAGGCTGGCACCAACCTCGTTGACAAGCTCGAAAAAATTCGAGTCCTTTCACAGaGTGCTTGTAATATGAGACAGGCAGGGATTGAGGACATGGCTGAGCTGCTAGAGAAACAATTGGCTTCAGCGTTATCCAAGATGACACTAGAAGAAGCTCTGACCCTTGCTCGTGCCTTTAGCCATCATCTTACTTTGATGGGTACAGCTGAAACCCACCATAGGGTTCGTAAAGGAGGAAATATGGCTTATGTTGCAAAATCTTGCGATGACATCTTTAACCAGCTGTTGCAAGCTGGTGTTTCTCCTGATGAGCTTTATAGCTCAGTTTGCAAGCAGGAGGTTGAAATTGTTCTTACAGCTCATCCCACTCAAATTAATCGCCGTACCTTGCAATACAAACACATTAGAATTGCTCATCTTTTGGATTATAATGATCGACCTGATCTTAGCCCTGAAGATCGAGAAATGGTGATTGAAGATCTGGTGAGAGAGATAACTTCAATATGGCAGACAGATGAGCTTAGGCGTGAGAAACCCACACCAGTTGATGAAGCTAGGGCTGGATTGAATATTGTGGAGCAATCACTCTGGAAAGCTGTTCCTCATTATTTACGCCGAGTTAGCAGCGCTTTAAAGAAGCACACGGGAAAACCACTTCCATTGACTTGCACCCCCATAAAGTTTGGATCTTGGATGGGAGGTGATAGAGATGGAAACCCAAATGTGACAGCAAAGGTCACAAAAGATGTTTCACTTCTGTCACGATGGATGGCAATTGACCTCTACGTTCGGGAAGTGGATAGCCTGAGATTTGAGCTCTCCATGAACCGGTGCAGCGATAAGTTGTCAAGACTGGCACATGAAATTCTAGAAGCTAACGATGAGGAGGATCACCGTGACCATTGGAATGAATCTATGAGTAGAAGTCAATTGAAACATCCTAATCAACAAGCTTCACCACTTCCAACTAAACTTCCAGCTGGAGCTCATTTACCCTCTTGTGCTGAAAAGGGTGGATCTGAGCACCCCAGACTCATGCCAGGAGCTGATCACAAGCAACTCAATCACAAGGATGGTGAGATTTCAAGTTCAACTGAGAGCAATGGTGGCAGTTGCAGTGCCCGTTCATCAATAGCAAGTTCACCAAATTCCAGTGCTTCTTCATTAGTTTCAATGACACGCTCTCCTTCTTTCAACTCTAGTCAACTTGTTGCTCAGAGGAAATTGTTTGCAGAATCCCAGATAGGAAGGTCCAGTTTTCAGAAGCTTTTGGAGCCAAAGCTTCCTCACCTTCCTGGAATTGCTCCTTATAGAGTTGTCCTTGGAGATGTAAAAGATAAGCTTCTGAGAACTCGTAGACGGTTGGAGCTTCTTATCGAGGATGGTCCATGTGAACATTATCCTATGGATTATTATGAAACAACAGATCAGCTTTTGGAACCTCTGCTCCTTAGTTATGAATCTTTGCAATCATGTGGATCTGGGGTGCTAGCTGATGGTCGACTTGCTGATCTGATTCGAAGAGTTGCTACTTTTGGCATGGTGTTAATGAAGCTTGACTTGCGTCAGGAATCTGGCAGACATGCTGAAACACTTGATGCAATTACAAGGTATTTGGATATGGGTACATACAGTGAATGGGATGAAGAAAAGAAACTGGACTTCTTAACTAGAGAACTGAAAGGGAAGAGGCCACTGGTTCCGTCTAGTATAGAGGTTGCTCCAGATGTTAAAGAAGTCCTGGATACATTCCGAACTGCTGCTGAGCTAGGGAGTGATTCATTTGGTGCCTATGTGATCTCTATGGCCTCAAATGCAAGTGATGTCCTTGCAGTAGAGCTTTTGCAGAAGGATGCACGACTTGCTGTTAGTGGGGAGTTAGGAAGAGCATGTCCTGGTGGAACGCTGCGGGTGGTTCCTCTATTTGAAACTGTGAAGGACCTGAGAGGTGCTGGTTCAGTTATCAGAAAGCTTTTGTCAATAGATTGGTACCGCCAACACATCATTAAAAACCATAATGGGCATCAAGAGGTTATGGTTGGGTATTCAGATTCTGGTAAAGATGCTGGGCGCTTCACTGCTGCTTGGGAACTTTACAAAGCTCAGGAGGATGTTGTGGCTGCATGCAAAGAGTATGGTATTAAGGTTACCCTGTTCCATGGCCGTGGAGGGAGTATTGGCCGTGGTGGTGGCCCAACATATCTGGCTATTCAGTCTCAACCACCTGGCTCTGTGATGGGAACCCTTCGGTCAACTGAGCAAGGAGAGATGGTGCAAGCCAAGTTTGGCTTGCCACAGACAGCTGTTAGACAGCTTGAGATATACACAACAGCTGTGTTACTTGCTACCCTTCGTCCTCCTCTCCCTCCACGCGAAGAAAAATGGCGCAATCTCATGGAAGACATTTCAAAGATCAGCTGCCAGTGTTACCGCAATGTGGTGTATGAAAATCCAGAATTCCTGTCCTACTTCCATGAAGCCACACCTGAAGCAGACCTTGGTTTCCTCAACATAGGTAGCCGCCCCACAAGGAGAAAAAGCTCAACAGGAATTGGACACCTCCGCGCCATTCCGTGGGTGTTTGCATGGACTCAAACCAGGTTTGTTCTTCCAGCTTGGCTTGGAGTTGGAGCAGGCTTGAAAGGTGCTATTGATAAAGGACAAACTGAAGAGCTAAAAGCCATGTACAAAGAGTGGCCTTTCTTTCAAAGCACAATAGACTTGATTGAGATGGTTTTGGGAAAAGCAGATATTCCTATTGCCAAGCGCTATGATGAAGTTCTTGTCTCAGAGAAGAGACAAGAACTTGGTCGTCAACTGAGGAGTGAGCTCATCACAACTGGCAAGTTTGTGCTAGTGGTTACTGGCCATGAGAAACCTCTGCAGAATAATAGGAGCTTAAGGAAGCTTATTGAAAGTAGACTTCCCTTTCTCAACCCCATGAACATGTTGCAAGTAGAGATACTCAAGAGGCTAAGATGTGATGATGACAACCTTAAAGCCAGAGATGCCTTGCTTATCACCATAAATGGTATTGCTGCTGGGATGAGGAACACTGGTTAA 3162 0.4541 MTDITDDVAEDISFQLFDDDCRLLGNLLKDVLQREAGTNLVDKLEKIRVLSQSACNMRQAGIEDMAELLEKQLASALSKMTLEEALTLARAFSHHLTLMGTAETHHRVRKGGNMAYVAKSCDDIFNQLLQAGVSPDELYSSVCKQEVEIVLTAHPTQINRRTLQYKHIRIAHLLDYNDRPDLSPEDREMVIEDLVREITSIWQTDELRREKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSSALKKHTGKPLPLTCTPIKFGSWMGGDRDGNPNVTAKVTKDVSLLSRWMAIDLYVREVDSLRFELSMNRCSDKLSRLAHEILEANDEEDHRDHWNESMSRSQLKHPNQQASPLPTKLPAGAHLPSCAEKGGSEHPRLMPGADHKQLNHKDGEISSSTESNGGSCSARSSIASSPNSSASSLVSMTRSPSFNSSQLVAQRKLFAESQIGRSSFQKLLEPKLPHLPGIAPYRVVLGDVKDKLLRTRRRLELLIEDGPCEHYPMDYYETTDQLLEPLLLSYESLQSCGSGVLADGRLADLIRRVATFGMVLMKLDLRQESGRHAETLDAITRYLDMGTYSEWDEEKKLDFLTRELKGKRPLVPSSIEVAPDVKEVLDTFRTAAELGSDSFGAYVISMASNASDVLAVELLQKDARLAVSGELGRACPGGTLRVVPLFETVKDLRGAGSVIRKLLSIDWYRQHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACKEYGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATLRPPLPPREEKWRNLMEDISKISCQCYRNVVYENPEFLSYFHEATPEADLGFLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGVGAGLKGAIDKGQTEELKAMYKEWPFFQSTIDLIEMVLGKADIPIAKRYDEVLVSEKRQELGRQLRSELITTGKFVLVVTGHEKPLQNNRSLRKLIESRLPFLNPMNMLQVEILKRLRCDDDNLKARDALLITINGIAAGMRNTG 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1342 1053 Pfam Phosphoenolpyruvate carboxylase 19 325 IPR021135 GO:0006099|GO:0008964|GO:0015977
Ssu2g1342 1053 Pfam Phosphoenolpyruvate carboxylase 461 1053 IPR021135 GO:0006099|GO:0008964|GO:0015977
Ssu2g1342 1053 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 711 723 IPR033129 -
Ssu2g1342 1053 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 4 9 1053 - -
Ssu2g1342 1053 MobiDBLite consensus disorder prediction 376 392 - -
Ssu2g1342 1053 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 150 161 IPR018129 -
Ssu2g1342 1053 Gene3D Phosphoenolpyruvate/pyruvate domain 289 354 - -
Ssu2g1342 1053 Gene3D Phosphoenolpyruvate/pyruvate domain 419 547 - -
Ssu2g1342 1053 MobiDBLite consensus disorder prediction 341 355 - -
Ssu2g1342 1053 MobiDBLite consensus disorder prediction 393 430 - -
Ssu2g1342 1053 MobiDBLite consensus disorder prediction 328 430 - -
Ssu2g1342 1053 PRINTS Phosphoenolpyruvate carboxylase signature 202 218 IPR021135 GO:0006099|GO:0008964|GO:0015977
Ssu2g1342 1053 PRINTS Phosphoenolpyruvate carboxylase signature 149 162 IPR021135 GO:0006099|GO:0008964|GO:0015977
Ssu2g1342 1053 PRINTS Phosphoenolpyruvate carboxylase signature 261 276 IPR021135 GO:0006099|GO:0008964|GO:0015977
Ssu2g1342 1053 Hamap Phosphoenolpyruvate carboxylase [ppc]. 9 1053 IPR022805 GO:0006099|GO:0008964|GO:0015977
Ssu2g1342 1053 Coils Coil 308 328 - -
Ssu2g1342 1053 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 9 1053 IPR021135 GO:0006099|GO:0008964|GO:0015977
Ssu2g1342 1053 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 19 1053 IPR015813 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1342 Ssu-Chr2 56777023 56788155 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1342 2 56777023 56788155 Ssu2g1342 2 56777023 56788155 ECH