Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1339 ATGAGGAACTTCAAGGCTTTTAGTCAAGCCATCATTGCTCTCTTCATCATCTCTCTGAGTGCAAGGTGTTATGGACAAGTAGAACTTGACATGGCTCCAATGAAGAAGGCAGAGAGGGATGCTCTATACTCCACCATTCAAGGCTTTGTTGGTGATTGGTGGAATGGCTCAGATCTCTATCCAGATCCTTGTGGTTGGACTCCTATTCAGGGGGTCTCTTGTgatctatttaatgaattttggtaTGTTACTGTCTTGAACATTGGACCAATCCACGACAATTCTCTAAGTTGTGCGAAAAAATTGGAATTCAGACCACAGTTGTTTGAGCTGAAGCACCTTAAATCTCTATCCCTCTTCAAATGCTTTGAATCACAACACAGGCATCAGGTTACCATCCCCAATGCAAACTGGGAAAAGCTGGCTGGCAGCTTAGAATCACTTGAGTTTAGATCAAACAAAGGTCTCATTGGAAAAATTCCTTCAAGTTTTGGTATCCTCAAGAACCTTCAGTCACTAGTATTATTAGAAAATGGCTTAACAGGTGAAATTCCACCAGAAATTGGCAACCTTAACAAGTTGAAGAGGCTTGTTCTCGCTGGAAACTATTTTACTGGACACATTCCAGATATTTTTAGTGCACTAGTTGACTTATTAATACTTGATTTAAGTAGAAATTCATTATCTGGGACTTTACCTCTGACACTTGGAAGATTAACTTCCCTTTTGAAGCTTGATGTGAGCCATAACCATTTGGAGGGGAATCTGCTAAAAGAATTTGCTTATCTTAAGAATCTGACCCTTATGGACCTTAGGAATAACGGATTCTCTGGTGGCTTGACCTTGAGTATTCAAGAGATGTATTCTTTAGAGGAAATGGTTCTGTCCAAGAATGCAGTAGGTGGAGATATCAGGACCCTAAAGTGGGAAAACCTTCATAACTTGGTCATTTTGGATCTCTCTAACATGGGGTTGACAGGGGAAATTCCTGAGTCTATATCAGAATTGCAGAGGTTGAGATTTTTAGGCCTTAGTGACAACTACCTCACAGGCAACCTTTCACCAAAACTATCAACTCTTCCTTGTCTTAATGCACTTTATGTTAGTGGTAACAATCTGGAAGGAGAGCTTAAATTCTCTATGGAGTTTTATGGAAAAATGGGAACACGTTTTGGGGCCTGGAACAACCCCAGCCTTTGCTACTCAGTTGGAGTAATGTCAACAAGTCATGTTCCATATGGGGTAAAACCATGCCAGCAAGAGATTAAATTGCTAGAATCTAATACAAATGATGGGGATGTGAACAAGACTTTCCATTCCATAGCCTCTTTGGGATTTATGAGCCATGCTCCTAATGGCTTCTGGTGGACTTTTCTATTGATCACGGTTCTCttcttaaattcttatataggTTTCTAA 1419 0.3946 MRNFKAFSQAIIALFIISLSARCYGQVELDMAPMKKAERDALYSTIQGFVGDWWNGSDLYPDPCGWTPIQGVSCDLFNEFWYVTVLNIGPIHDNSLSCAKKLEFRPQLFELKHLKSLSLFKCFESQHRHQVTIPNANWEKLAGSLESLEFRSNKGLIGKIPSSFGILKNLQSLVLLENGLTGEIPPEIGNLNKLKRLVLAGNYFTGHIPDIFSALVDLLILDLSRNSLSGTLPLTLGRLTSLLKLDVSHNHLEGNLLKEFAYLKNLTLMDLRNNGFSGGLTLSIQEMYSLEEMVLSKNAVGGDIRTLKWENLHNLVILDLSNMGLTGEIPESISELQRLRFLGLSDNYLTGNLSPKLSTLPCLNALYVSGNNLEGELKFSMEFYGKMGTRFGAWNNPSLCYSVGVMSTSHVPYGVKPCQQEIKLLESNTNDGDVNKTFHSIASLGFMSHAPNGFWWTFLLITVLFLNSYIGF 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1339 472 Gene3D Ribonuclease Inhibitor 35 307 IPR032675 -
Ssu2g1339 472 PRINTS Leucine-rich repeat signature 239 252 - -
Ssu2g1339 472 PRINTS Leucine-rich repeat signature 218 231 - -
Ssu2g1339 472 PANTHER PIRIFORMOSPORA INDICA-INSENSITIVE PROTEIN 2-LIKE 6 463 - -
Ssu2g1339 472 Gene3D Ribonuclease Inhibitor 308 403 IPR032675 -
Ssu2g1339 472 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 6 463 - -
Ssu2g1339 472 Pfam Leucine rich repeat 193 252 IPR001611 GO:0005515
Ssu2g1339 472 SUPERFAMILY L domain-like 40 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1339 Ssu-Chr2 56683716 56685715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1339 138 454 Receptor kinase-like Gene Family AT4G08850 30.145 6.51e-33 130
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1339 2 56683716 56685715 Ssu2g1339 2 56683716 56685715 ECH