Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1338 ATGTTCACGCCGCAGAGAAAGGCGTGGCCCGCTGCGGCGCCGCCGTTCACGCCGCACCGAGGCGGCGCCGCGGTGGCTTCCGCCTCCGCGAAGGGCAAGGCCGTCGCCGAGGATCCACCGCCGCCGCTGGGGTCGCTGACCGAAACCACCGTGGCGGCGGGGTTCGACGCGGGGAACGTCGAGGACTGGAAGAGGTTCAAGGAGTTAGGGTTGCTGGACGAGGCTGTGATGCAGAGGAAGGACCACGAAGCGCTCTTGGAGAAGGTCTCGAGGCTCGAAAGAGAGCTTTTTGACTACCAATACAATATGGGCCTCCTGTTAATTGAGAAGAAAGAATGGAATTCGAAGTTTGATCAGATGAGGCAAGAACTAGCTGAAACTGAGGAGATTCTAAAACGAGAACAGTCAGcacatttaattgcattatttGAAGTTGAGAAGCGAGAGGAAAATTTGAGGAAAGCATTAAGCACGGAGAGGCAATGTGGAACTGATCTTGAGAGAGCTCTGCGTGCGATGCAAGAAGAGCATGCCCAAGTCCAGTCTTCCTCCCATACAAAGCTAGCTGAAGCAAATGCATTGGTGGATGGAATTGAAGAGAAGTCTTCAGTGGTTGACAAGAAACTGCTTGATGCAGAAGCTATGCTTGCTGAGATCAACAGAAAAAATGCAGAGCTGGATATGAAATTGCGAGAGGTGGAGGTTCGTGAAAGTTTGCTTCAAAAGGAGCGTTTGTCTTTAGCTACTGATCGAGAATCATTTGAGGCAACATTCTACAAACAAAGGGAAGATTTGAAGGAGCGGGAAAGGAATCTACAGCAAAGAGAAGATATGCTCTGTGATGGTAGGCAAAATCTTGgcgagaaagaagaaaagatagtTGAAACCGAGAGGAACCTTAAGCAGAAAGAGAGAGACCTAGAAGTGTTGGAGAAGAAAATTGATTCATCTAGTTCTTTATTGAAAGAAAAGGAGGCTGAGATAATTAGAAGAGTAGCAGATTTAGATGTGGAAGAGAAGAAAGTGGATTCTTTAAAGAGCGTGTtggagatgaaagagaaagaattgCTTGCACTGGAACTAAAGCTTAGTGCTAGAGAAAGAGAGGGGATCCAGAAGCTCCTTGGTGAACAAAAGGCTGCTCTGGATTTAAAGTTGCAGCAGTTGGAACTTGAAATGGAACAAAAGCAGAAATCCCTTGTTGAGGAGTTTAGCTGCAAGGAGGAAGCCTTGGAGCAGAGGGAAGTCGAAGTCAACCATAGGGAAAAAAAGGTTGCAAAAGAAGAGCAGGCCTTGAgagaagaaaagacaatgaaaatcaaagagaaaGAGTTGGAGAAGGAAAAACAGCAACTGCTTGCTGATCGGGAGAGCCTGGAGAACTTAAATGCTgaacttgataagataaaggcTGAGATTTCTCAGCAGGAGCTGCAAATATGCCAAGAGAGTGAGAATTTGAAGCTTATTGAACAAGAGAGGACAGAGCATTCTCGTTTGCAATTGGAACTAAAACAGGAGATAGAGCATACCAGATTGCAGAAGGACTTTCTTATGAAGGAAGCTGAAAACTTAAGGGAGGAGAGACAGAGGTTTGAGAAAGAGTGGGAAGTGCTGGATGAGAAAAGAGCAGAAATTACTAGAAAGCAGCGTGATAttgatgtggagaaagaaagtctAAGAAAACTTCAGAACAATGAAGAGGAAAGGttgaaaagagagaaacaacATATGCAAGATCATATAAAGAAAGAGCTGGAGAAGGTTGAATTAGAGAAGGAATCATTTAGAGATTCAATGAAGCAGGAGAAACTTCTTTTGTCTGAAaaggtgaaaaatgaaaaggcacAAATGCTTCAAGATTTTGAATCGAAGACGAGGAATCTTGAGAATGAAATCCAGAAAAGACAGGAGGAAATGGATAAAGACTTGCAGGAAAGGGAGAGAAATTTTCAGGAGGAGATGCGAAGAGAgcttgataatattaatatcttgaaGGATGTTACTGAGAAGGAATGGGAAGAAGTGAAGGCTGAAGGGATTAGGTTAGAAAATGAGAGGAAGGAACTTGAGTCAAACAAGCAGCAACTGAAGTCAGGTCAACGCGAGATGCATGAAGATTCTGAAATGCTTATGAATCTGAGCCGGAAGGTTAAGAAGGAACGTGAACGCCTTGTGgctgaaagaaaatattttcttgaactTGTTGAGAAGCTAAGGAGTTGCAAGGGCTGTGGTGAAGTTGTTAGGGACTTTGTTGTATCTGATATTCAGTTACCTGACTTTAAGGAAAGAGTGGCCATTCCCTCACCTATCTCCCCTGTTCTGAACGGCAAGCCTCTTAAGAACTCCCAGGACAATGTAGCTGCTTCTGACTTTAACAATTCTGGATCTACAAGGCCTGTTTCTTGGCTCCGTAAATGCACATCCAAGATTTTCAATTTGTCCCCGAGTAAAAGAACAGATGCTGTTGGTGCTTTAGACATGGCTGGGACATCACTACTGTCAGATGTGAATGTTAGTGTAGAAAACGTAGATGAGCCTGCATCCCTTCCTAATATAGAAGGAGCTAGAGTTATTCCTGAAGAACGACAACCAGCAGGTGGGATGGCACATCACTCTTCAGATACACCACACCTCCAATCTGATAACATTGTTAAAGAAGTTGGTGATGAATACTCTCTATCCATAGGTGATCACAGCCGTGTGGATAGTTTGGTAGATGGAGATCCTGGTGATTCTCAGCAGTCAGTTCCAAAGCTTGGTCGGCGCAGACCTGGGAGGAAAAGCAAATCTGGAATTGCTAGAACACGCTCAGTGAAGGCTGTTGTTGAAGAGGCCAAGGAGTTCCTGGGAAAAGCCCcacagaaaatagaaaatgcaagTTTGCTGTCTCTTAATACTGATAGTATCAAAGAAGACAGTCAAGAAGACTCCAGTCACACTGAGAAAGCCATTGGTAACACTGGAAGGAAGCGGCAACGGGCACAAACTTCTAGGGTTACAGAAAGTGAGCGGAATGCTGGTGATAGTGAAGGACACTCAGATAGTATTACAACTGGTGGGCGCAGGAAGAAGAGGCAAACGGTTGCTCCACCTGCACAAGTTACTGGGGAGAAGCGATACAATCTCAGGCGGCATAAGACTGCAGGCAAAGATTCATCAACACAGGATTTATCTAAAGGAACAAAGGGTGTGGAGAAAGAAGCTGATGGTGGTAAACTGGAGGGGGATAAAAGCCCTGAAGTTGTTGAAACTTTAGTAGTAGCTGAAGACAATGTACAAAACACAAGCCTGGTGCAGGTCCCGACAGTAAAGACTGTGGAGTTCACAGATGATAGAGTTGTTAGGtTTGAAGTACCAAGAGATATTGTCGATGACAATGGTGCTGCAACAGACTCTCTGAATCGTGTGGAGGAAAATGGTACACCAGAATATCGAGATGAAGATGGAAGCACAATCCATGAAGTCGAAAATGATAAtgatgaggaggaggaggaggaggaggaggaagaagaagaagatgaagaggaaCATCTGGGTGAGGTGTCCATTGGAAAGAAGATCTTCAGATTTTTTACAACATGA 3588 0.4156 MFTPQRKAWPAAAPPFTPHRGGAAVASASAKGKAVAEDPPPPLGSLTETTVAAGFDAGNVEDWKRFKELGLLDEAVMQRKDHEALLEKVSRLERELFDYQYNMGLLLIEKKEWNSKFDQMRQELAETEEILKREQSAHLIALFEVEKREENLRKALSTERQCGTDLERALRAMQEEHAQVQSSSHTKLAEANALVDGIEEKSSVVDKKLLDAEAMLAEINRKNAELDMKLREVEVRESLLQKERLSLATDRESFEATFYKQREDLKERERNLQQREDMLCDGRQNLGEKEEKIVETERNLKQKERDLEVLEKKIDSSSSLLKEKEAEIIRRVADLDVEEKKVDSLKSVLEMKEKELLALELKLSAREREGIQKLLGEQKAALDLKLQQLELEMEQKQKSLVEEFSCKEEALEQREVEVNHREKKVAKEEQALREEKTMKIKEKELEKEKQQLLADRESLENLNAELDKIKAEISQQELQICQESENLKLIEQERTEHSRLQLELKQEIEHTRLQKDFLMKEAENLREERQRFEKEWEVLDEKRAEITRKQRDIDVEKESLRKLQNNEEERLKREKQHMQDHIKKELEKVELEKESFRDSMKQEKLLLSEKVKNEKAQMLQDFESKTRNLENEIQKRQEEMDKDLQERERNFQEEMRRELDNINILKDVTEKEWEEVKAEGIRLENERKELESNKQQLKSGQREMHEDSEMLMNLSRKVKKERERLVAERKYFLELVEKLRSCKGCGEVVRDFVVSDIQLPDFKERVAIPSPISPVLNGKPLKNSQDNVAASDFNNSGSTRPVSWLRKCTSKIFNLSPSKRTDAVGALDMAGTSLLSDVNVSVENVDEPASLPNIEGARVIPEERQPAGGMAHHSSDTPHLQSDNIVKEVGDEYSLSIGDHSRVDSLVDGDPGDSQQSVPKLGRRRPGRKSKSGIARTRSVKAVVEEAKEFLGKAPQKIENASLLSLNTDSIKEDSQEDSSHTEKAIGNTGRKRQRAQTSRVTESERNAGDSEGHSDSITTGGRRKKRQTVAPPAQVTGEKRYNLRRHKTAGKDSSTQDLSKGTKGVEKEADGGKLEGDKSPEVVETLVVAEDNVQNTSLVQVPTVKTVEFTDDRVVRFEVPRDIVDDNGAATDSLNRVEENGTPEYRDEDGSTIHEVENDNDEEEEEEEEEEEEDEEEHLGEVSIGKKIFRFFTT 1195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1338 1195 Coils Coil 490 588 - -
Ssu2g1338 1195 MobiDBLite consensus disorder prediction 1155 1179 - -
Ssu2g1338 1195 Coils Coil 597 650 - -
Ssu2g1338 1195 Coils Coil 209 236 - -
Ssu2g1338 1195 MobiDBLite consensus disorder prediction 901 940 - -
Ssu2g1338 1195 Coils Coil 1154 1179 - -
Ssu2g1338 1195 Coils Coil 110 137 - -
Ssu2g1338 1195 MobiDBLite consensus disorder prediction 1 45 - -
Ssu2g1338 1195 Coils Coil 372 399 - -
Ssu2g1338 1195 MobiDBLite consensus disorder prediction 1040 1054 - -
Ssu2g1338 1195 MobiDBLite consensus disorder prediction 970 1079 - -
Ssu2g1338 1195 Coils Coil 75 95 - -
Ssu2g1338 1195 Coils Coil 335 369 - -
Ssu2g1338 1195 PANTHER PROTEIN CROWDED NUCLEI 4 1 1195 IPR040418 GO:0005634|GO:0006997
Ssu2g1338 1195 Coils Coil 426 479 - -
Ssu2g1338 1195 MobiDBLite consensus disorder prediction 1062 1079 - -
Ssu2g1338 1195 Coils Coil 652 703 - -
Ssu2g1338 1195 MobiDBLite consensus disorder prediction 1140 1154 - -
Ssu2g1338 1195 Coils Coil 286 327 - -
Ssu2g1338 1195 MobiDBLite consensus disorder prediction 971 1023 - -
Ssu2g1338 1195 PANTHER PROTEIN CROWDED NUCLEI 3 1 1195 - -
Ssu2g1338 1195 MobiDBLite consensus disorder prediction 1126 1183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1338 Ssu-Chr2 56658205 56668680 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1338 2 56658205 56668680 Ssu2g1338 2 56658205 56668680 ECH