Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1337 ATGGCGTCCGAGAGCGCTTCTCGATCGAGTTCCGCTGCCGATTCGTACATTGGGAGCTTGATAAGCTTGACCTCTAAGAGTGAGATCAGATACGAAGGCATTCTCTACAACATCAACACCGAAGAGTCCAGTATTGGCCTCAGAAACGTGCGATCTTTTGGAACAGAAGGAAGGAAAAAGGATGGTCCACAAATTCCTCCAGGTGACAAGGTTTACGAGTATATACTTTTCCGCGGGACTGATATCAAGGATTTACAGGTTAAATCTTCTCCACCTGTCCAACCAACTCCACAAGTCAACAATGACCCAGCTATTATTCAGTCTCACTATCCTCGCCCAGTCACCACATCTACAAGTTTGCCGTCTGCTGTAAGTGGGTCTTTGACTGATCTTAGTTCTCATACCACACAACTTGGACTTTCTGGGGCAAATTTTCAAGGGCCCTTGCCTTTGTATCAACCTGGAGGGAACATAGGATCATGGGGAGCTTCTCCACCTGCTCCAAATGCAAATGGTGGTAGGCTTGCTATGCCAATGTATTTTCAAGGATATTATGGTGCCCCAAATGGGCTTCCTTATTTACACCAACAATCTTTGCTTCAACCGCCACCTGGTTTATCAATGCCTTCTTCTATGCAGCAGCAAATGCAGTATCCCAATTTCAGTCCCTCTTTACCTACTGTATCTTCTAATTTGCCAGAATTGCCATCATCTTTGCTACCTGTGAGTACTAGTATCCCTAGTGTAACATCTGCTTCCTTGCCTCCATCTAATTTGCCTCCAGCTAATTTGCCTCCAGCACCTTCTGCTCTGCCTCCTGCCCCTTCTGCTCTGCCTCCTGCCCCTTCTGCTTTATCTCCTGTTCCTTCTTCTTTATCTCCTGCACCTTCTGCTTTATCTCCCGTACCTTCTGCGGCACTAATTTCTGAAATTTTGCCAGTATCAGTAACAAACAAGGCACCCAATGTTTCAACCTCAGCAGCCATGTTAGCTGCTAACATACCATCACTGACTTCACTGACCAACTCTGGTCCAGATATAAATGTTATAGTGCCACCGATCTCCAGCAAACCGAATGCAATTTCAGGTTCAAGCTTGCCGTATCAAACTGTATCCCAGTTGTCTCCTGCAGTTGTTGGATCATCAAGTTCTATCCATCCAGAAACATCAGCCCCTTCTCTGGTAACCCCAGGTCAATTATTGCAGCTTGGACCAACTATAGTTTCTTCAGCTCAGCCTTCACAAGTACCTCATAAGGATGTTGAAGTGGTTCAGGTATCATCAACGTTATCTCCTGAGCCATCTCTGCCAGTTTCTACTGAAACTCAACCACCAATACTGCCATTGCCAGTAACTTCACGGCCAAGTCACAGGCCCGGTGGAGCTCCTACCCAAATTCATCATGGCTATAGTTACAGAGGACgcggaagaggaagaggaactGGGGGTTTGCGCCCAGTCACAAAATTCACTGAAGATTTTGATTTCATGGCAATGAATGAGAAGTTCAAAAAGGATGAAGTATGGGGTCATCTTGGTAAAAATAAGTGTCATACCAAAGACAAAGATGGGGAAGAAAATGCCTTTGATGAAGATTATCAAGATGAAGATAATGACGATTTATCAAACCTTGAGGTTAAGCCTGTTTATAACAAGGATGACTTCTTTGACTCGCTCTCTTCAAACGTACATGATAATGCTTTGCAGAATGGAAGGACTAGATACTCTGAACAAATCAAGATTGATACTGAGACGTTTGGTGATTTTGTGAGGTACCGCGGTGGTCGTGGGGGCCGTGGTGGACGTAGTCGAGGTGGTTATTATGGAAGAGGAGGAGGGTATGGTTATTCTGGAAGAGGGAGGGGACGCGGCATGCCCAGTCGCACTTTGTAG 1893 0.4501 MASESASRSSSAADSYIGSLISLTSKSEIRYEGILYNINTEESSIGLRNVRSFGTEGRKKDGPQIPPGDKVYEYILFRGTDIKDLQVKSSPPVQPTPQVNNDPAIIQSHYPRPVTTSTSLPSAVSGSLTDLSSHTTQLGLSGANFQGPLPLYQPGGNIGSWGASPPAPNANGGRLAMPMYFQGYYGAPNGLPYLHQQSLLQPPPGLSMPSSMQQQMQYPNFSPSLPTVSSNLPELPSSLLPVSTSIPSVTSASLPPSNLPPANLPPAPSALPPAPSALPPAPSALSPVPSSLSPAPSALSPVPSAALISEILPVSVTNKAPNVSTSAAMLAANIPSLTSLTNSGPDINVIVPPISSKPNAISGSSLPYQTVSQLSPAVVGSSSSIHPETSAPSLVTPGQLLQLGPTIVSSAQPSQVPHKDVEVVQVSSTLSPEPSLPVSTETQPPILPLPVTSRPSHRPGGAPTQIHHGYSYRGRGRGRGTGGLRPVTKFTEDFDFMAMNEKFKKDEVWGHLGKNKCHTKDKDGEENAFDEDYQDEDNDDLSNLEVKPVYNKDDFFDSLSSNVHDNALQNGRTRYSEQIKIDTETFGDFVRYRGGRGGRGGRSRGGYYGRGGGYGYSGRGRGRGMPSRTL 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1337 630 ProSiteProfiles DFDF domain profile. 482 518 IPR025762 -
Ssu2g1337 630 CDD LSm14_N 16 87 IPR025609 -
Ssu2g1337 630 SMART FDF_2 488 590 IPR019050 -
Ssu2g1337 630 PANTHER SCD6 PROTEIN-RELATED 267 624 - -
Ssu2g1337 630 PANTHER SCD6 PROTEIN-RELATED 1 256 - -
Ssu2g1337 630 MobiDBLite consensus disorder prediction 518 537 - -
Ssu2g1337 630 PANTHER LSM DOMAIN, FDF DOMAIN, FFD BOX, DFDF DOMAIN, TFG BOX-RELATED 267 624 - -
Ssu2g1337 630 PANTHER LSM DOMAIN, FDF DOMAIN, FFD BOX, DFDF DOMAIN, TFG BOX-RELATED 1 256 - -
Ssu2g1337 630 MobiDBLite consensus disorder prediction 258 289 - -
Ssu2g1337 630 SUPERFAMILY Sm-like ribonucleoproteins 15 92 IPR010920 -
Ssu2g1337 630 Pfam Scd6-like Sm domain 16 89 IPR025609 -
Ssu2g1337 630 MobiDBLite consensus disorder prediction 438 452 - -
Ssu2g1337 630 MobiDBLite consensus disorder prediction 431 485 - -
Ssu2g1337 630 ProSiteProfiles FFD box profile. 548 563 IPR025761 -
Ssu2g1337 630 MobiDBLite consensus disorder prediction 246 296 - -
Ssu2g1337 630 Gene3D - 6 92 - -
Ssu2g1337 630 Pfam FDF domain 489 587 IPR019050 -
Ssu2g1337 630 ProSiteProfiles TFG box profile. 570 590 IPR025768 -
Ssu2g1337 630 SMART LSM14_2 10 110 IPR025609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1337 Ssu-Chr2 56615543 56643758 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1337 2 56615543 56643758 Ssu2g1337 2 56615543 56643758 ECH