Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1327 ATGTCTCCACACGCCTCCCTCCTTCCCCTCTTCTTCATCCTCACCCTCACCTTCGCACATTTCACCACCTCCGCAGACTACCTCAAGCTACCCTTACTCCCTCGAAACACCCTCTCCTCCCCGTCCCACCTCCTCGCCGCCGACCTCCGCCGCCTCTCCCGCCGCCGCCCTTCCCCGCAGTCCCCCCTCTCGTCCGGCGCCGCGACGGGCTCCGGCCAGTACTTCGCCGACCTCCGGCTGGGCTCCCCGCCGCAGCGCCTCCTCCTCGTCGCCGACACCGGCAGCGACCTCGTCTGGGTCAAATGCTCCGCGTGCAGAAACTGCTCCGCCCGCCCCCCCGGATCCGCATTCCTCCCCCGCCACTCCGCAACCTTCTCCTCCCACCACTGCTACGACCCCCTCTGCCAGCTCGTCCCGCACCCTCACCCTACCCCGCGCTGCACCAACCGCACCCGATTCCACACCCCCTGCCGCTACCAGTACTCCTACGCGGACGGGTCCGCCACGTCCGGCTTCTTCTCCCGCGAAACGGCGACGTTCAACACCACCTCCCGCAGACAAGCTACCGTCAAAAACCTCGCCTTCGGGTGCGGCTTCAAAGCCTCCGGCGCTAGCTTCAACGGCGCGCAGGGCGTGATGGGCCTGGGCCGCGGCCCCATCTCCTTCGCCTCCCAACTGGGCCGCAAATTCGGGAACACGTTCTCCTACTGTCTCCTCGACTACACCCTATCCCCGCCACCCAAAAGTTACCTCACCATCGGCGCCGTTTCGAGGAAGCTCTTTAGTTTCACGCCGCTGGTGACTAACCCTTTCTCTCCCTCGTTTTATTACGTTTCCGTCGAGAGCGTTTCCGTTGACGGCGTTACGTTGCCGATCAGTCCTTCCGTTTGGGGGATCGACGCCGACGGTAACGGCGGCACCGTCGTGGATTCCGGCACAACGTTGACGTTTCTCGCACAGCCTGCTTACCGGCTGGTCCTGGCCGCGTTCCGGCGGCGCGTGAGGCTGCCGCCGGCGGAGGGGATCGCGCTCGGGTTTGACCTTTGCGTTAACGTTTCCGGCGTGGCGAGGCCGAGGCTGCCGCGGCTGAGGCTCGGATTCGCCGGGAAATCGGCGCTGTCGCCGCCGGTGGGGAATTATTTTATTGAGGCAGCGGAGGGAGTGAAGTGTCTGGCGGTGCAGCCGGTTCGACCGGGTTCGGGGTTCTCTGTGATCGGGAATCTGATGCAGCAAGGGTACTTGTTTGAGTTCGATTTGGACCGGTCGCGGATCGGGTTCTCGCGTCACGGTTGTGCGGTTCGCTGA 1305 0.649 MSPHASLLPLFFILTLTFAHFTTSADYLKLPLLPRNTLSSPSHLLAADLRRLSRRRPSPQSPLSSGAATGSGQYFADLRLGSPPQRLLLVADTGSDLVWVKCSACRNCSARPPGSAFLPRHSATFSSHHCYDPLCQLVPHPHPTPRCTNRTRFHTPCRYQYSYADGSATSGFFSRETATFNTTSRRQATVKNLAFGCGFKASGASFNGAQGVMGLGRGPISFASQLGRKFGNTFSYCLLDYTLSPPPKSYLTIGAVSRKLFSFTPLVTNPFSPSFYYVSVESVSVDGVTLPISPSVWGIDADGNGGTVVDSGTTLTFLAQPAYRLVLAAFRRRVRLPPAEGIALGFDLCVNVSGVARPRLPRLRLGFAGKSALSPPVGNYFIEAAEGVKCLAVQPVRPGSGFSVIGNLMQQGYLFEFDLDRSRIGFSRHGCAVR 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1327 434 PANTHER OS07G0603500 PROTEIN-RELATED 5 433 - -
Ssu2g1327 434 Pfam Xylanase inhibitor N-terminal 74 254 IPR032861 -
Ssu2g1327 434 ProSiteProfiles Peptidase family A1 domain profile. 74 427 IPR033121 -
Ssu2g1327 434 PANTHER BNAA02G27600D PROTEIN 5 433 - -
Ssu2g1327 434 SUPERFAMILY Acid proteases 68 431 IPR021109 -
Ssu2g1327 434 Pfam Xylanase inhibitor C-terminal 276 427 IPR032799 -
Ssu2g1327 434 Gene3D Acid Proteases 52 250 IPR021109 -
Ssu2g1327 434 PRINTS Pepsin (A1) aspartic protease family signature 249 262 IPR001461 GO:0004190|GO:0006508
Ssu2g1327 434 PRINTS Pepsin (A1) aspartic protease family signature 403 418 IPR001461 GO:0004190|GO:0006508
Ssu2g1327 434 PRINTS Pepsin (A1) aspartic protease family signature 80 100 IPR001461 GO:0004190|GO:0006508
Ssu2g1327 434 PRINTS Pepsin (A1) aspartic protease family signature 307 318 IPR001461 GO:0004190|GO:0006508
Ssu2g1327 434 CDD pepsin_A_like_plant 73 431 IPR034161 -
Ssu2g1327 434 Gene3D Acid Proteases 251 433 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1327 Ssu-Chr2 56490426 56491730 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1327 46 431 Miscellaneous Gene Families AT1G77480 26.420 7.03e-26 107
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1327 2 56490426 56491730 Ssu2g1327 2 56490426 56491730 ECH