Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1322 ATGGCTGGACCATCATGGTTGGTGGACAAAAGTAGAATTGCTACCAAAATAAAATGTGCATCAGGAGCATGTGATCCTGGAAAGGTTATATGGAAAAGCAATCCTACCAAGGCTTGCCCAAATTGTCAACATGCTATTGACAACAATGATGTAGCACAAGAGTGGCCTGGCTTACCAAAAGGTGTCAAATTTGATCCATCTGATCAGGAGATAATTTGGCACTTGCTTGCAAAAGTTGGGGTAGGAGATTCAAAACCTCATCCTTTCATTGAGGAATTTATTACCCTTCTTGAAGTGGATGATGGAATTTGCTATACTCATCCTCAAAATTTACCTGGTGTTAAGCTAAATGGAAGTGCTTCGCACTTCTTCAATAGAGCTATCAAGGCTTACAACACCGGCACCCGAAAGCGCCGAAAAATACAAGGGCAAGATTTTGGTGATTTCCGCTGGCACAAGACTGGCAGGACTAAACCAGTTATCTTGAATGGGGTTCAAAAAGGCTGTAAGAAGATTATGGTTCTGTATGAGAACAATGTAAAAGGAGGAAGAGCTGAGAAAACTAATTGGGTTATGCATCAATATCACCTAGGAACAGAAGAGGATGAAAAGGATGGGGAGTACATAATCTCTAAAGTGTTTTACCAGCAGCAGCAAGTCAAATTGGGTGATAAAGATGACCAAGATGTTCCTGAAGCCACTGAAACCACTGAATCAACAATTGTGAAAGTGGATCCTGTCACTCCCAAATCTGTGACTCCTGAGCCTTCTTGTAATGAAAGGCGGTGTGCAGATCTAGACCTAGGACAAGAAACACATGACATTCCTCAGCTTCCCCAAATGGATTGTTTAGATGAAATTCAAGCTGATTGCCAAGACCTTGCAACTGAACCATCCATGGAAGAAACTCAACCTAATGAGGGGAtggataataaagaaaataatgctGACGAAGGCCAAAAATGGTGGGACAGTGAGTCACAGAATCTGCTGGATTCACAACAACTGGTCGAAGCACTGTCGTTGTGTGATGATCTACTCCATAGCCAGTCTCCCGGTAGAGATGGGAAACATGAAGAACATAAGAACCAACCTGGTCTTTCTGTTTATGCTCAGCTAGGACCTGAACATCTGAAGAAGGATATTGAAGAGTGTCAAAATCTTGCCCTTGATCCTGCAAATATGGAGCAGGATACACCTTCAGAGTTTCGACTAAGTCAGCTGgAGTTTGGTTCACAGGACAGCTTTATTTCCTGGGGCTACGGCAAGGCAGTGAACTAA 1281 0.4223 MAGPSWLVDKSRIATKIKCASGACDPGKVIWKSNPTKACPNCQHAIDNNDVAQEWPGLPKGVKFDPSDQEIIWHLLAKVGVGDSKPHPFIEEFITLLEVDDGICYTHPQNLPGVKLNGSASHFFNRAIKAYNTGTRKRRKIQGQDFGDFRWHKTGRTKPVILNGVQKGCKKIMVLYENNVKGGRAEKTNWVMHQYHLGTEEDEKDGEYIISKVFYQQQQVKLGDKDDQDVPEATETTESTIVKVDPVTPKSVTPEPSCNERRCADLDLGQETHDIPQLPQMDCLDEIQADCQDLATEPSMEETQPNEGMDNKENNADEGQKWWDSESQNLLDSQQLVEALSLCDDLLHSQSPGRDGKHEEHKNQPGLSVYAQLGPEHLKKDIEECQNLALDPANMEQDTPSEFRLSQLEFGSQDSFISWGYGKAVN 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1322 426 MobiDBLite consensus disorder prediction 298 318 - -
Ssu2g1322 426 PANTHER SUPPRESSOR OF GAMMA RESPONSE 1 2 420 - -
Ssu2g1322 426 Gene3D NAC domain 67 221 IPR036093 GO:0003677|GO:0006355
Ssu2g1322 426 SUPERFAMILY NAC domain 43 216 IPR036093 GO:0003677|GO:0006355
Ssu2g1322 426 ProSiteProfiles NAC domain profile. 58 216 IPR003441 GO:0003677|GO:0006355
Ssu2g1322 426 Pfam No apical meristem (NAM) protein 59 197 IPR003441 GO:0003677|GO:0006355
Ssu2g1322 426 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 2 420 IPR044799 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1322 Ssu-Chr2 56219806 56224698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1322 14 223 NAC Transcription Factor Family AT1G28470 50.685 7.57e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu2g1322 NAM 2.1e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1322 2 56219806 56224698 Ssu2g1322 2 56219806 56224698 ECH