Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1320 ATGGCCACTGTTGCCACTAGAGGAATTGGAGTAGGAGTGACAAAGCTCCTACCCCACAAACCAAAGCACAAGTCCTTGTTTCTTGGCCAGAGGCTTAGGATTAGACCCTCTGGGGAGACTCAATGCAGTGCAAGATTCAGTGTCTCAAACCCAAAAGTGGTTCAAGTTTTTGCACTGGGGGGTGAATGGGTTGACACAGTTCACAACCTTTTTGTGGGTGTTGGGGTTGGACTTCCTTGCAGTGTGATGCAGTGTGGGGATGTAATCTATAGGAGCACTCTTCCCAAGTCCAATGGCTTGACACTTACTGTCCCTGGGGTGATCCTGGCTTTGGGGACTCTATCTTACCTTTGGGCCACACCTGGTGTGGCACCTGGTTTCTTTGACATGTTTGTTCTTGCTTTTATTGAAAGGTTGTTCCGACCCACTTACAAAAAGGATGATTTTGTTCTCGGGAAGAAGTTGGGGGAGGGATCATTTGGAGTGGTTTATAGGGTGTCACTGGCCAACAAGCCCTCTTCAAagGAAGGTGACTTAGTCTTGAAGAAGGCAACTGAATATGGTGCTGTAGAAATTTGGATGAATGAGCGTGTACGAAGAGCCTGTGCAAACAGCTGTGCAGACTTTGTTTATGGTTTTCTTGAGAGCTCTTCAAAGAAGGCTGCTGAGTACTGGCTTATATGGCGGTTTGAAGGCAATTCCACCCTAGCAGACTTGATACAGAATAGAGAGTTTCCATATAATGTTGAAACATTAATTTTGGGTGAGGTCCAAGACTTGCCCAAAGGATtggaaagagaaaatagaatcATTCAAACAATCATGAGACAGATCTTGTTTGCACTGGATGGTCTTCACTCAACTGGTATTGTGCATAGGGATATTAAGCCACAGAACATTATTTTCTCTGAAGAATCTCGTAcattcaaaattattgatcttGGAGCTGCTACAGACCTGCGAGTTGGCATCAACTACATTCCTAAGGAGTTTCTTTTGGATCCAAGATATACTGCACCAGAGCAGTACATCATGAGCACACAAACGCCATCAGCACCCTCAGTTCCAGTTGCCGCTGCACTTTCCCCAGTCTTATGGCAGTTGAATTTGCCTGACAGATTCGATATCTATAGTGCTGGTTTAATCTTTCTTCAAATGGCATTCCCCGGTTTACGCTCTGATAATAGCCTCATACAATTCAACCGTCAATTAAAGAGGTGTGAATATGACTTGGTTGCGTGGAGAAAAAATGTAGAGCCTCGATGCGGCCCTGAACTTAGGAGGGGCTTTGAGCTGTTGGATTTGGATGGTGGAATAGGATGGGAACTTCTGAAATCAATGGTAAGGTACAAAGCAAGACAAAGGCTGAGTGCAAAAGCAGCATTAGCTCATCCTTACTTTGACAGAGAAGGCTTGTTGGCATTGTCTTTCATGCAAACACTGAGGCTGCAGCTCTTACGTGCAACTCAGCAGGATTATGGAGAAGCTGCCAAGTGGATTACTCAGCTAATGGCAAAATCAGGGACACAGAAGGATGGTGGATTCACTGAAGCTCAGCTTCAGGAACTGAGAGAAATTGAACCTACTAAAAAGAAGGCTAATGCACAGAGAAATGCTCTAGCTTCAGCCCTTAAACTTCAGAGGAAAATTATAAGAACCTTAAATGAGAGTATGGATGAGCTCAACAGACGCAGGAAAGGCCTTTGGTGGAGCAGATGGATCCCAAGAGAGGaatga 1737 0.4398 MATVATRGIGVGVTKLLPHKPKHKSLFLGQRLRIRPSGETQCSARFSVSNPKVVQVFALGGEWVDTVHNLFVGVGVGLPCSVMQCGDVIYRSTLPKSNGLTLTVPGVILALGTLSYLWATPGVAPGFFDMFVLAFIERLFRPTYKKDDFVLGKKLGEGSFGVVYRVSLANKPSSKEGDLVLKKATEYGAVEIWMNERVRRACANSCADFVYGFLESSSKKAAEYWLIWRFEGNSTLADLIQNREFPYNVETLILGEVQDLPKGLERENRIIQTIMRQILFALDGLHSTGIVHRDIKPQNIIFSEESRTFKIIDLGAATDLRVGINYIPKEFLLDPRYTAPEQYIMSTQTPSAPSVPVAAALSPVLWQLNLPDRFDIYSAGLIFLQMAFPGLRSDNSLIQFNRQLKRCEYDLVAWRKNVEPRCGPELRRGFELLDLDGGIGWELLKSMVRYKARQRLSAKAALAHPYFDREGLLALSFMQTLRLQLLRATQQDYGEAAKWITQLMAKSGTQKDGGFTEAQLQELREIEPTKKKANAQRNALASALKLQRKIIRTLNESMDELNRRRKGLWWSRWIPREE 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1320 578 Pfam Protein kinase domain 150 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1320 578 Gene3D Phosphorylase Kinase; domain 1 136 229 - -
Ssu2g1320 578 SMART serkin_6 149 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1320 578 Coils Coil 544 564 - -
Ssu2g1320 578 ProSitePatterns Protein kinases ATP-binding region signature. 155 182 IPR017441 GO:0005524
Ssu2g1320 578 ProSitePatterns Serine/Threonine protein kinases active-site signature. 290 302 IPR008271 GO:0004672|GO:0006468
Ssu2g1320 578 CDD STKc_SNT7_plant 153 467 - -
Ssu2g1320 578 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 20 578 IPR044803 GO:0004674|GO:0009579
Ssu2g1320 578 SUPERFAMILY Protein kinase-like (PK-like) 134 469 IPR011009 -
Ssu2g1320 578 Gene3D Transferase(Phosphotransferase) domain 1 258 471 - -
Ssu2g1320 578 PANTHER SERINE/THREONINE-PROTEIN KINASE STN7, CHLOROPLASTIC 20 578 - -
Ssu2g1320 578 ProSiteProfiles Protein kinase domain profile. 149 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1320 Ssu-Chr2 56181142 56194162 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1320 267 468 Core Cell Cycle Gene Families AT2G38620 30.986 1.34e-17 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Ssu2g1320 Pkinase 2.9e-20 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1320 2 56181142 56194162 Ssu2g1320 2 56181142 56194162 ECH