Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1311 ATGCAAACTCACTCTTTCTCCTCCTACATATCCTCTTGTCCAGGTAGTGGTACCTTCTTGGAACCTGATCATGAGGCTGTAGATGAAGCCTCCATCTCCCTCTCTCTTGGCCCTCCTGGCCAACAACACAACCCCAAAGCCACTTCCTCCTCCTCTAACCACCCTTCCACTCTGCACCATTACCAGCAAAACCCTACCTCTGATGACCAGAGAGGTGTAACTGTGGCCCTTCACATTGGCCTTCCCAATCCCACCACTTTGCCAAACAGTGCCACCCCCACTACTAGCAAGCCTGATCTTCATTTGGCCTCTGCTCCCATTCAGGGTCAGTACTGGATCCCTTCTCCTGCTCAAATCCTCATTGGACCCACCCAGTTCTCTTGCACTGTCTGCAACAAAATGTTCAACCGTTTCAACAATATGCAGATGCACATGTGGGGACATGGGTCACAATACAGGAAAGGACCTGAATCATTGAGAGGGGCAAAACCAGCTTCTTCAATGCTGAGGCTTCCCTGCTATTGTTGTGCTGAGGGTTGCAAGAACAACATAGACCATCCAAGAAAGTGTGGCAAGCCTTTTGCTGTGAGAGGGGATTGGAGGACACATGAGAAGAATTGTGGGAAGCTTTGGTTCTGCATCTGTGGTTCTGATTTCAAGCACAAGAGGTCCCTCAAAGACCATGTTCGTGCCTTTGGTGATGGCCATGCTCCACACACAGTGGAGAGCTGTGATCAGATGGGGGAAGATGAATTGTTTggtgatgaagatgatgaggaATTAGAActagaagatgatgatgaagattatAACAGTAATGAAGTGGTTTATGgctttaattaa 843 0.4579 MQTHSFSSYISSCPGSGTFLEPDHEAVDEASISLSLGPPGQQHNPKATSSSSNHPSTLHHYQQNPTSDDQRGVTVALHIGLPNPTTLPNSATPTTSKPDLHLASAPIQGQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGAKPASSMLRLPCYCCAEGCKNNIDHPRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCDQMGEDELFGDEDDEELELEDDDEDYNSNEVVYGFN 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1311 280 MobiDBLite consensus disorder prediction 35 69 - -
Ssu2g1311 280 SUPERFAMILY beta-beta-alpha zinc fingers 110 147 IPR036236 -
Ssu2g1311 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 126 153 IPR013087 -
Ssu2g1311 280 PANTHER ZINC FINGER PROTEIN WIP6 2 188 - -
Ssu2g1311 280 PANTHER ZINC FINGER PROTEIN WIP6 188 270 - -
Ssu2g1311 280 ProSitePatterns Zinc finger C2H2 type domain signature. 128 148 IPR013087 -
Ssu2g1311 280 MobiDBLite consensus disorder prediction 1 15 - -
Ssu2g1311 280 MobiDBLite consensus disorder prediction 1 69 - -
Ssu2g1311 280 PANTHER ZINC FINGER PROTEIN WIP2 2 188 IPR043584 GO:0003700|GO:0010468
Ssu2g1311 280 PANTHER ZINC FINGER PROTEIN WIP2 188 270 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1311 Ssu-Chr2 55990054 55991610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1311 28 241 C2H2 Transcription Factor Family AT1G13290 63.071 7.73e-100 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu2g1311 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1311 2 55990054 55991610 Ssu2g1311 2 55990054 55991610 ECH