Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1310 ATGCAATTCGCCGAGAAAATGCAACCCCGGAAAATGGGTTTCCGTGAGTACATCGAAGCattggaggaagaaaggagaaaaattcAAGTTTTCCCCAAAGAGCTTCCTCTGTCGCTGGAGCTTGTCACGCAAGCCATTGAAGCGTGTAGGCAGCAACTGTTTGGAACAGTTGCGGAGTACAATTTGAATGGCCAATCGGAGTGTTCGGAGCAGACAACATCAACGGATGAAGGACCTGTTTTTGAGGAGTTCATTCCTTTGAAGAAAAGTGCATCCCTAGACTGTgttgaagaagaagatgaagatgaacaACATTCTCATAAGCACCAGAACATAAATTCCGCCACTGATAAAAAGAAATCAGATTGGCTCAGATCCGTTCAGTTGTGGAATCCCAATCCCCCTCGTGCCAAAGAGGATGTGCCTAGGAAAACTAATGTTGTGGAAGTGAAGAGAAACGGTGGTGCTTTCCAACCGTTCCATAGAGAGGAAAAAAGTGCTGTAGGAAAGGCTAATCCATCAGTAATTGGTAAAGCACCCTCTTCACCGCCAGTGCCAGCTGCAAGTTCTACGGGACCAGTGAGAGTAGACAGCAAAAGAGAGGAGAAAGGATCACAGGCACAGAGAAAGCAACGCCGGAGCTGGTCACAGGAATTGCACAAGCGCTTCTTGCATGCCCTCCAGCAACTTGGGGGTGCAGATTCTGCCACGCCCAAACAGATCAGGGAGCTAATGAAGGTTGATGGCCTCACCAACGATGAAGTCAAGAGCCATTTACAGAAATTTCGTTTGCATACTAGGAGAAGCCCCATAATTCACAACAATGCTAGTTCACAAACAGGTTCTTTGTTTCTTGTGGGGAACATTTTTGTGCAGCCACCAGAGTATGCTGCGGTAGCTACCTCAACAGCATCTGGAGGGGAATTGACCACAGTTACTGCTCCAACTGGAATATATGCGCCTGTGGCTGCACACGCTCCAGCTGTCACGCACACACCAATTATGAAGCCACAGTTTAAGCAATTAGATGATGTGTCTGAGCATGCACATTCTCAGGAAAGGGCTAATCATAGCGTTCGTTCAAACTCACCTGCCTCATCGTCCTCCACACACACTATCACAACTTCACCTGCCCCTTGA 1140 0.4579 MQFAEKMQPRKMGFREYIEALEEERRKIQVFPKELPLSLELVTQAIEACRQQLFGTVAEYNLNGQSECSEQTTSTDEGPVFEEFIPLKKSASLDCVEEEDEDEQHSHKHQNINSATDKKKSDWLRSVQLWNPNPPRAKEDVPRKTNVVEVKRNGGAFQPFHREEKSAVGKANPSVIGKAPSSPPVPAASSTGPVRVDSKREEKGSQAQRKQRRSWSQELHKRFLHALQQLGGADSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRSPIIHNNASSQTGSLFLVGNIFVQPPEYAAVATSTASGGELTTVTAPTGIYAPVAAHAPAVTHTPIMKPQFKQLDDVSEHAHSQERANHSVRSNSPASSSSTHTITTSPAP 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1310 379 MobiDBLite consensus disorder prediction 152 217 - -
Ssu2g1310 379 Gene3D - 209 267 - -
Ssu2g1310 379 MobiDBLite consensus disorder prediction 195 217 - -
Ssu2g1310 379 MobiDBLite consensus disorder prediction 356 379 - -
Ssu2g1310 379 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 210 265 IPR006447 GO:0003677
Ssu2g1310 379 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 3 375 - -
Ssu2g1310 379 MobiDBLite consensus disorder prediction 101 118 - -
Ssu2g1310 379 Pfam Myb-like DNA-binding domain 212 261 IPR001005 -
Ssu2g1310 379 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 375 IPR044787 GO:0003700|GO:0006355
Ssu2g1310 379 MobiDBLite consensus disorder prediction 96 118 - -
Ssu2g1310 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 207 267 IPR017930 -
Ssu2g1310 379 MobiDBLite consensus disorder prediction 342 379 - -
Ssu2g1310 379 SUPERFAMILY Homeodomain-like 208 268 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1310 Ssu-Chr2 55954721 55956686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1310 1 324 G2-like Transcription Factor Family AT1G68670 48.094 1.06e-80 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu2g1310 Myb_DNA-binding 1.1e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1310 2 55954721 55956686 Ssu2g1310 2 55954721 55956686 ECH