Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1302 ATGCCAAATCCAATGGAACTTCTCATTTATCTCTTCCCACTCTTCCTTCTCTTTTGCTCAACACACTCCCGAACCACACCACACACACCCAAAACGACACTCCTCGACGTCGTTTCCTCCCTTCAAAACGCACACAATGTGGTCGCCTTCCCCCATCGCCACCCTCTCCAACGACAACAAGAACCGTCGCTGCTATCGTCGTTCGCCATTCACTTACACTCTCGAGCCTCAATTCAAAAACCCTCCCACAGCGACTACAAATCCCTAACCCTCGCGCGACTCGCGCGCGACTCGGCCCGAGTCAGGGCCCTACAAACTCGCCTAGATCTCGCGCTGAACCGCGTCTCGAACTCGGATCTCCACCCGGCCGAGTCAAACGCCGAGTTCGAGTCCAACGCGCTCCAAGGCCCAATCGTCTCGGGAACGAGTCAGGGAAGCGGCGAGTACTTCCTCCGAGTCGGAATCGGAAAGCCACCGAGTCAAGCCTACGTGGTGCTCGACACAGGAAGCGACGTGAGTTGGGTCCAGTGCGCTCCATGCAGTGCGTGCTATTCACAGTCCGACCCAATTTTCGACCCGGTTCTGTCCTCTTCCTACGCGCCGATCCACTGCGCCGCGCCGCAGTGTAAATCCCTAGACCTCTCCGAGTGCCGCAACGGAACGTGCCTCTACGAGGTCTCCTACGGTGACGGATCCTACACCGTCGGAGAATTCGCGACGGAGACGGTGACGCTCGGGGCGGCGTCCGTCGCCGGCGTCGCCATCGGCTGCGGCCACAACAACGAAGGCCTCTTCGTCGGCGCCGCCGGTTTGCTCGGCCTCGGCGGCGGAAAGCTTTCGTTTCGGGCGCAGGTCAATGCGACGTCGTTTTCGTACTGCCTCGTGGACCGCGACTCCGACGCTGTTTCCACGCTCGAGTTCGATTCTCCGTTTCCGCGCAACGCCGTCACCGCGCCGCTAATGCGGAACCCCGAGCTCGACACGTTCTACTACCTCGGCTTGAAAGGAATCAGCGTCGGCGGCGAGGCTCTTCCGATTCCGGAAACGAGTTTCGAGGTCGACGCCGGCGGTGGCGGGGGGATTATCGTGGATTCCGGCACGGCGGTGACGCGGTTGCGGAGCGAGGTGTACGACGCACTGAGGGACGCGTTTGTGAGGGGGACGAAGGGGCTGCCGAAGGCGAACGGCGTGTCGTTGTTTGACACGTGCTACGACTTGTCGTCGAGGAACAGCGTGGAGGTGCCGACGGTGTCGTTTCGGTTTCCTGGGGGGAGGGAGTTACCGTTACCGGCGAAGAATTACCTGATACCGGTTGACTCGGTGGGGACGTTTTGCTTCGGGTTTGCGCCCACGACGTCCTCGCTGTCAATCATTGGGAACGTGCAGCAGCAGGGGACACGTGTCGGTTTTGATATCGCTAACTCACTCGTTGGATTCTCTGCCAGTAGCTGCTAA 1455 0.6021 MPNPMELLIYLFPLFLLFCSTHSRTTPHTPKTTLLDVVSSLQNAHNVVAFPHRHPLQRQQEPSLLSSFAIHLHSRASIQKPSHSDYKSLTLARLARDSARVRALQTRLDLALNRVSNSDLHPAESNAEFESNALQGPIVSGTSQGSGEYFLRVGIGKPPSQAYVVLDTGSDVSWVQCAPCSACYSQSDPIFDPVLSSSYAPIHCAAPQCKSLDLSECRNGTCLYEVSYGDGSYTVGEFATETVTLGAASVAGVAIGCGHNNEGLFVGAAGLLGLGGGKLSFRAQVNATSFSYCLVDRDSDAVSTLEFDSPFPRNAVTAPLMRNPELDTFYYLGLKGISVGGEALPIPETSFEVDAGGGGGIIVDSGTAVTRLRSEVYDALRDAFVRGTKGLPKANGVSLFDTCYDLSSRNSVEVPTVSFRFPGGRELPLPAKNYLIPVDSVGTFCFGFAPTTSSLSIIGNVQQQGTRVGFDIANSLVGFSASSC 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1302 484 Pfam Xylanase inhibitor C-terminal 330 480 IPR032799 -
Ssu2g1302 484 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 164 175 IPR001969 GO:0004190|GO:0006508
Ssu2g1302 484 Gene3D Acid Proteases 122 307 IPR021109 -
Ssu2g1302 484 ProSiteProfiles Peptidase family A1 domain profile. 149 480 IPR033121 -
Ssu2g1302 484 Gene3D Acid Proteases 309 484 IPR021109 -
Ssu2g1302 484 SUPERFAMILY Acid proteases 142 484 IPR021109 -
Ssu2g1302 484 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 35 484 - -
Ssu2g1302 484 CDD cnd41_like 148 484 IPR033873 -
Ssu2g1302 484 Pfam Xylanase inhibitor N-terminal 149 306 IPR032861 -
Ssu2g1302 484 PANTHER ASPARTYL PROTEASES 35 484 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1302 Ssu-Chr2 55740242 55741696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1302 139 484 Miscellaneous Gene Families AT1G77480 26.440 1.71e-24 103
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1302 2 55740242 55741696 Ssu2g1302 2 55740242 55741696 ECH