Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1301 ATGAAAAATATGCAAGGCTTCAAGGCAGCACAACCAAGTTCACAACTCTATTGCCACTCTTCCTTCTTGCTTCGGGGAAACGACACCAACCGAAACCCAACGCGGTTCTCTGACCTTGGGGACCTTCACCATTCCTCTGCCGTTTTTCATGAAGAAGATGCTGTTGATTTAAGCTCAAGTTCTATGTTTAGTGTGAAGTCAAGCAATGTTGTTGGTGGTAGTAACTTGCAGTATGGGACATTGAGCACgAATGTTGGGTCTGCAGAGATTGGTTCAAGTGGGGGAGGGTGCATGGATACAGGGCAGCAGCTGATGTACCACAAGGGAGTGGCTATGGCAGCCTTGCCTTTGGGGAATGGTCATGTTGAGAATTGGGCTGATTCAGGCATAGCAGATAATAGCCACCAGACTGATGATACTTCCACAGATATTGACACTGATGATAAAGTCCAACATAATAGAGTTAAGAATGGGACGCGAATGGTTGTGCATTCCAAGGATCAGACAAAGGTCAAAACTGAAGATCCGAAGACCATTCGTAGGCTGGCGCAGAATCGGGAGGCTGCAAGGAAGAGTCGGTTAAGGAAAAAGgCGTATGTACAGCAGTTGGAGAACAGCCGAGTCAAGCTTGTGCAATTAGAGCAAGAGCTTCAGCGAGCACGTCAGCAGGGTATATTTATTGCAACTCCAGGGGACCAAGGTCATTTGGCTGCTGGGAATGGTGCCTTGGCATTTGACATAGACTATGCTCACTGGGTTGATGAGCATCAACGTCTGCTCAATGAGCTAAGAACAGCTGTAAATTCTCAAATGAGTGATAATGAATTACATCTTCTTGTTGATGGTGTCATGGCACATTATAATGAGTTATTTAGGTTAAAGAGCATAGGGGCAAAGGCTGATATATTACACATACTTAATGGGATGTGGAAAACGCCAGTGGAAAGACGTTTTATGTGGCTTGGTGGATTCCGTTCGTCTGAACTTCTTAAGATCATCAAGAACCACCTTGAGCCGTTAACAGATCAGCAGTTGATGGGCATTTGTAATCTGCAGCAATCGTCGCAGCAGGCTGAGGATGCGTTAACTCAAGGCATGGAAGCATTGCAACAAGCTCTTGTGGAAACACTTTCCTCCACCTCCCTAGGACCCACTGGTAGTGGAAATGTTGCTGATTACATGGGCCAAATGGCAATTGCAATGAGCAAGCTTGCTGATCTGGAGAGTTTCCTTCATCAGGCTGACCTCTTGAAGCAACAAATGCTTCAACAGTTGCAGCGAATTTTGACGACGCGACAAACTGCCCGAGCCCTCCTTGTCCAAAATGATTACATTTCAAGACTAAGAGCACTTAGTTCATTATGGTTGGCACGCCCAAGAGAGTAG 1386 0.4589 MKNMQGFKAAQPSSQLYCHSSFLLRGNDTNRNPTRFSDLGDLHHSSAVFHEEDAVDLSSSSMFSVKSSNVVGGSNLQYGTLSTNVGSAEIGSSGGGCMDTGQQLMYHKGVAMAALPLGNGHVENWADSGIADNSHQTDDTSTDIDTDDKVQHNRVKNGTRMVVHSKDQTKVKTEDPKTIRRLAQNREAARKSRLRKKAYVQQLENSRVKLVQLEQELQRARQQGIFIATPGDQGHLAAGNGALAFDIDYAHWVDEHQRLLNELRTAVNSQMSDNELHLLVDGVMAHYNELFRLKSIGAKADILHILNGMWKTPVERRFMWLGGFRSSELLKIIKNHLEPLTDQQLMGICNLQQSSQQAEDALTQGMEALQQALVETLSSTSLGPTGSGNVADYMGQMAIAMSKLADLESFLHQADLLKQQMLQQLQRILTTRQTARALLVQNDYISRLRALSSLWLARPRE 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1301 461 CDD bZIP_HBP1b-like 177 229 - -
Ssu2g1301 461 ProSiteProfiles DOG1 domain profile. 242 458 IPR025422 GO:0006351|GO:0043565
Ssu2g1301 461 PANTHER TRANSCRIPTION FACTOR TGA9 41 461 - -
Ssu2g1301 461 SMART brlzneu 173 242 IPR004827 GO:0003700|GO:0006355
Ssu2g1301 461 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 41 461 - -
Ssu2g1301 461 SUPERFAMILY Leucine zipper domain 177 220 IPR046347 GO:0003700|GO:0006355
Ssu2g1301 461 Pfam bZIP transcription factor 177 216 IPR004827 GO:0003700|GO:0006355
Ssu2g1301 461 Pfam Seed dormancy control 260 334 IPR025422 GO:0006351|GO:0043565
Ssu2g1301 461 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 175 219 IPR004827 GO:0003700|GO:0006355
Ssu2g1301 461 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 180 195 IPR004827 GO:0003700|GO:0006355
Ssu2g1301 461 Coils Coil 196 223 - -
Ssu2g1301 461 Gene3D - 176 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1301 Ssu-Chr2 55677391 55682492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1301 7 461 bZIP Transcription Factor Family AT1G68640 57.479 2.03e-164 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu2g1301 DOG1 3.4e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1301 2 55677391 55682492 Ssu2g1301 2 55677391 55682492 ECH