Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1297 atggctATGGTTGATGAGCCGCTATATCCAATAGCAGTGCTTATAGATGAACTGAAAAATGATGACATCCAGCTACGGTTGAACTCAATTCGAAAGCTATCGACGATTGCACGGGCTCTTGGGGAGGAGCGAACACGTAGGGAATTGATACCGTTTTTGGGTgagaataatgatgatgatgatgaggtaCTTCTTGTGATGGCGGAAGAGTTGGGGGTGTTCGTTCCTTTTGTTGGGGGAGTGGAACATGCCCATGTGTTGCTCCCGCCGCTGGAGACGCTTTGCAGTGTTGAGGAAACATGTGTGAGAGATAAAGCTGTGGAATCACTTTGTAGGATTGGATCACAAATGAGGGAGAGTGATTTGGTTGATTATTTCATCCCTTTGGTGACGaGATTGGCGACGGGTGAATGGTTCACTGCTCGAGTCTCTTCATGTGGACTATTTCATATTGCTTACCCTAGTGCACCAGAAATGATAAAGACAGAGTTGAGATCATTATACAGTTTGTTGTGTCAAGATGACATGCCAATGGTTAGAAGATCTGCTGCATCAAATCTTGGGAAGTTTGCTGCAACTGTTGAATATGCTTATTTGAAGGCAGACACTATGTCAATTTTTGAGGATCTTACTAAGGATGATCAAGACTCTGTTAGATTGTTGGCTGTGGAGGGTTGTGCTGCTCTTGGCAAGCTGCTGGAGCCACAAGATTGTGTCACACATATACTGCCTGTTATTGTCAACTTCTCACAGGATAAGTCATGGCGTGTGCGATACATGGTTGCGAATCAATTGTATGAGCTTTGTGAAGCTGTAGGCCCTGAACCTACTAGaaCGGAATTGGTCCCTGCCTATGTGCGGTTGCTTCGAGACAATGAAGCTGAAGTACGGATTGCAGCTGCTGGGAAAGTGACCAAGTTTTGCCGGATTTTAAATCCAGATCTTGCAATTCAGCATATTCTTCCTTGTGTGAAGGAATTGTCGACAGATTCTTCGCAGCATGTTCGCTCCGCTTTGGCTTCAGTAATAATGGGAATGGCTCCAGTGTTAGGAAAGGATGCAACAATTGAGCAACTTCTTCCTATTTTCCTCTCCCTTTTGAAGGATGAATTTCCTGATGTGCGCCTAAATATAATAAGCAAGCTTGATCAAGTGAATCAGGTCATTGGAATCAATTTGTTATCTCAATCTTTGTTACCAGCCATTGTTGAGCTTGCCGAGGATAGGCATTGGAGGGTTCGGCTTGCAATAATAGAGTATATACCCTTGTTGGCAAGTCAATTGGGGGTTGGATTTTTTGATGACAAGCTTGGTGCTCTTTGCATGCAGTGGTTACAAGACAAGGTTCATTCAATCCGTGAGGCAGCTGCTAACAACTTGAAGCGCCTAGCTGAAGAATTTGGTCCTGACTGGGCTATGCAGCACATAATTCCACAGGTTTTGGAAATGATTAACAATCCACACTATTTGTATCGAATGACCGTTCTTCAAACTATCTCTCTGCTTGCTCCTGTGATGGGCTCTGAAATCACTTGTTCAAAATTATTGCCTGTTGTTATTGCTGCATCTAAAGACAgAGTGCCCAACATTAAGTTCAATGTGGCAAAGGTCTTGGAGTCAATTTTCCCCATAGTGGATCAATCTGTTGTGGAAAAGACCATCCGTCCAAGTCTGGTTGAGCTCAGCGAGGATCCTGATGTTGATGTAAGATTTTTTTCCAATCAAGCACTTCAGGCAATTGATCATGTCATGATGTCTAGCTAG 1764 0.4291 MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRKLSTIARALGEERTRRELIPFLGENNDDDDEVLLVMAEELGVFVPFVGGVEHAHVLLPPLETLCSVEETCVRDKAVESLCRIGSQMRESDLVDYFIPLVTRLATGEWFTARVSSCGLFHIAYPSAPEMIKTELRSLYSLLCQDDMPMVRRSAASNLGKFAATVEYAYLKADTMSIFEDLTKDDQDSVRLLAVEGCAALGKLLEPQDCVTHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPDLAIQHILPCVKELSTDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGINLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVHSIREAAANNLKRLAEEFGPDWAMQHIIPQVLEMINNPHYLYRMTVLQTISLLAPVMGSEITCSKLLPVVIAASKDRVPNIKFNVAKVLESIFPIVDQSVVEKTIRPSLVELSEDPDVDVRFFSNQALQAIDHVMMSS 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1297 587 ProSiteProfiles HEAT repeat profile. 359 397 IPR021133 -
Ssu2g1297 587 SUPERFAMILY ARM repeat 8 580 IPR016024 -
Ssu2g1297 587 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 1 587 - -
Ssu2g1297 587 Gene3D - 2 583 IPR011989 -
Ssu2g1297 587 ProSiteProfiles HEAT repeat profile. 554 587 IPR021133 -
Ssu2g1297 587 ProSiteProfiles HEAT repeat profile. 203 241 IPR021133 -
Ssu2g1297 587 PANTHER PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT A, PUTATIVE-RELATED 1 587 - -
Ssu2g1297 587 ProSiteProfiles HEAT repeat profile. 242 280 IPR021133 -
Ssu2g1297 587 ProSiteProfiles HEAT repeat profile. 10 48 IPR021133 -
Ssu2g1297 587 ProSiteProfiles HEAT repeat profile. 398 436 IPR021133 -
Ssu2g1297 587 ProSiteProfiles HEAT repeat profile. 476 514 IPR021133 -
Ssu2g1297 587 ProSiteProfiles HEAT repeat profile. 320 358 IPR021133 -
Ssu2g1297 587 Pfam HEAT repeat 242 270 IPR000357 GO:0005515
Ssu2g1297 587 ProSiteProfiles HEAT repeat profile. 437 475 IPR021133 -
Ssu2g1297 587 ProSiteProfiles HEAT repeat profile. 281 319 IPR021133 -
Ssu2g1297 587 ProSiteProfiles HEAT repeat profile. 515 553 IPR021133 -
Ssu2g1297 587 Pfam HEAT repeats 361 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1297 Ssu-Chr2 55625334 55633827 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1297 2 55625334 55633827 Ssu2g1297 2 55625334 55633827 ECH