Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1287 ATGGAGAGAGTGGCGTCCTGGGCGGGAACGACGTCGTGCGAGAGGAGCGTGTACGTGAGCTGGGAGGAGGTGTTCGTGTCGAGCGACAAGGGAAGGAGAGAGGTTCATTATTTGCTGAAACGACGAGGCGGTGGGTCGGATCTGGCCGTCGTGGGAAAAGAGAAAAGCCTGAGACACATGTCGTATCGATACACGATAAGAGGCGCGTCGTTGGGGCCTTACTTGAAACTCAAATCGCGAAGAGAGGTCGTTGAGTGGCTGGACTCGGTTGTCTCAGATTCGTCTCCTGGGGATGCGATTATGGTGGGAAAACATGGTTCTGAGCCTGAAATTAGAGCCTTGAAGGATAATCAATTGCAGAAGAATCGTCATTCTACGAAAGAATTTTCATGGATAGGGTTTCCATGGACAtgtaagaaaagaagaaagcacTATCAGGCATTTAAGAGGAATGGTTTTCAGATATCCGTGaatgattttgtatttgttCTGGCAGAAGAGGACAAGCGTCTAGTTGCCTACTTGGAAGACCTGTATGAGGATTCCAGAGGCAACAAGATGGTTGTGGTGCGCTGGTTTCACAAAATTGATGAGGTTGGTATTGTTTTGCCTCACAATTTAAGTGGCAGAGaggttttcttttctctttatcttcaAGATCTGAGTATTGAATGCATAGATGGATTGGCTTTCGTCCTCAGTCCTGGGCATTACGAAAAGTTTCAGAATGAGGCCCGTCATACTCACTTGGAACCATTCGTGTGCAATCACCAATTTGATAATGATGATGTGAAACCCTTTGATATAACACAGATTAAAGGTTACTGGAAACAGAAAATACTCAGGTACATGTATACCCAATTGGACTCGAAATCTAGTGGTAGTTCCAGGCAATCTGATGATGGCCTGGAGCTGGATGAAAATAACCTGTCTACTGCTCTAATCAGACCTAACAAGAGGCAGCGTATCATCCAAGATGATGCCAAAGTTGCAGCTGATTTAGCTGCTCTTAAATTGGAAAATCCGAGTAACAGTAAGATTAATACCAAAATCAATACTGGAAACAATTCCTTGAAACTGTTTGGGCACACAAACATGACAACAACCATTAAAGGGACAAATGAACATGCTTCACAGCATTTAGTTGTAGGTTCCCAAGTTGAGGTCCTCTCTCTAGACAGCGGGATGAGAGGGTGTTGGTTTAGAGCTTCTGTCATTAAGAAGCACAAAGATAAAGTTAAGGTGCAATATCAGGACATTCAGGATGCGGCTGATGAAACTAAGAAGCTTGAGGAATGGGTTTTAGCTTCCAGAATTGCAGTGCCCGACAATCTGGGTCTTCGAATGTGCGGGCGGGCCATGGTCCGGCCAGCTCCACCAGCTAACAAACATGAATTATCGTGGGCGGGTGATGTTGGTTCCATTGTTGATACCTGGTGGCATGATGGATGGTGGGAAGGCATTGTTGTTCAAAAAGACTCCGAAGCTAATTATCATGTTTATTTCCCAGGGGAAAAGGTGGTGTCAGTATTTGGTCCTTGTAACTTAAGACTGTCTCAAGATTGGGTAGTGAATGAGTGGGTGACTGTGAGGGAAAGGCCTGATCTTGTGGCTTCTATTTTATCAACcctgaaaacaaaacaaaactcaatcAAATCCACTGACAGCAAATCAACTGCAGCACCCACTAGGGATGGAGGAATACAATCTAAGCAATCAGATACTTGCTCGGATTCTGAAAGGCATAGACCAAGAAAGCCGGAATTGGTTCCAGATCTTCTGAAGGATGATTTGTTATCCCAGTTAAGGTGGAAGACAACTGGAAAGAGGAGACGAGGAAGCAGTGCCTGTTATCGGAAGCCACGGTACGCTAGCCATCAGAAGAAGTCCCCAAAGGTTCTGACATTGGATGCTCCTGACAGTTTTGTGATCCCTGCATCACTGAAAGTTGATCACGATGACTGCAAATATGTGGGTGATCCTTCCATTTTCAGTTCTTCAGTTGTGCCTTCTCTAACTAGCTTGGTTATGTGTAGGTGA 2040 0.4358 MERVASWAGTTSCERSVYVSWEEVFVSSDKGRREVHYLLKRRGGGSDLAVVGKEKSLRHMSYRYTIRGASLGPYLKLKSRREVVEWLDSVVSDSSPGDAIMVGKHGSEPEIRALKDNQLQKNRHSTKEFSWIGFPWTCKKRRKHYQAFKRNGFQISVNDFVFVLAEEDKRLVAYLEDLYEDSRGNKMVVVRWFHKIDEVGIVLPHNLSGREVFFSLYLQDLSIECIDGLAFVLSPGHYEKFQNEARHTHLEPFVCNHQFDNDDVKPFDITQIKGYWKQKILRYMYTQLDSKSSGSSRQSDDGLELDENNLSTALIRPNKRQRIIQDDAKVAADLAALKLENPSNSKINTKINTGNNSLKLFGHTNMTTTIKGTNEHASQHLVVGSQVEVLSLDSGMRGCWFRASVIKKHKDKVKVQYQDIQDAADETKKLEEWVLASRIAVPDNLGLRMCGRAMVRPAPPANKHELSWAGDVGSIVDTWWHDGWWEGIVVQKDSEANYHVYFPGEKVVSVFGPCNLRLSQDWVVNEWVTVRERPDLVASILSTLKTKQNSIKSTDSKSTAAPTRDGGIQSKQSDTCSDSERHRPRKPELVPDLLKDDLLSQLRWKTTGKRRRGSSACYRKPRYASHQKKSPKVLTLDAPDSFVIPASLKVDHDDCKYVGDPSIFSSSVVPSLTSLVMCR 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1287 679 ProSiteProfiles BAH domain profile. 153 270 IPR001025 GO:0003682
Ssu2g1287 679 Pfam Agenet domain 384 460 IPR008395 -
Ssu2g1287 679 MobiDBLite consensus disorder prediction 548 589 - -
Ssu2g1287 679 MobiDBLite consensus disorder prediction 548 574 - -
Ssu2g1287 679 MobiDBLite consensus disorder prediction 575 589 - -
Ssu2g1287 679 SMART BAH_4 153 270 IPR001025 GO:0003682
Ssu2g1287 679 SMART agenet_At_2 379 445 IPR014002 -
Ssu2g1287 679 SMART agenet_At_2 471 524 IPR014002 -
Ssu2g1287 679 Pfam BAH domain 155 262 IPR001025 GO:0003682
Ssu2g1287 679 Gene3D - 124 269 IPR043151 -
Ssu2g1287 679 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 15 678 - -
Ssu2g1287 679 PANTHER AGENET AND BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 15 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1287 Ssu-Chr2 55485737 55488696 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1287 2 55485737 55488696 Ssu2g1287 2 55485737 55488696 ECH